Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B07
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.082
SB_14449| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            30   1.0  
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             29   1.8  
SB_18927| Best HMM Match : GAF (HMM E-Value=0.18)                      29   2.3  
SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)                   28   4.1  
SB_23449| Best HMM Match : IL8 (HMM E-Value=6.2)                       27   7.2  
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   7.2  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            27   9.5  

>SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 313 VLEKIAQIKLEQAENSDDKLPKLTSRADAIATTGEEYQIEDDYN 444
           +L K+A I  E + N  DKLPK+T RA   ++  E Y +  D N
Sbjct: 14  LLPKVAFIHSEDSVNLCDKLPKVTGRASLTSSLIEAYGLLKDRN 57


>SB_14449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 132 RHLGIRMRHDWKFCCICCLLHSPREYIERLNNTWQISESGISTFSRRPG 278
           + + +  R D +     C L +P E+ ER+N  W+    GI +  R PG
Sbjct: 70  KEISLPPRPDGEDNSFTCTLFAPYEHFERINTKWR-ERPGIGSEERGPG 117


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 265 AADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDDKLPKLTSRADAIATT 411
           A + A L+  NT   H++EK++ +K      SD+KL      A+A+ ++
Sbjct: 366 AGEGASLMAVNTLHIHIMEKLSSVKELLTCKSDEKLALSPQLAEAVVSS 414


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 205 NISSASIILGKSQNPESLRLAADLAKLVGH-NTFAEHVLEKIAQIKLEQAENSDDKLPKL 381
           N  S  + L K+ NP+ +RLA    KL G  ++   H+ +K    KL+ A     K+PK 
Sbjct: 724 NPISIDLKLQKALNPDDVRLAQ--IKLAGSLHSIDVHITDK----KLDLAVQ---KVPKS 774

Query: 382 TSRADAIATTGEEYQIEDDYNDD 450
              A A+ T+      +DD +DD
Sbjct: 775 AKIAGALETSPGNKDDDDDDDDD 797


>SB_18927| Best HMM Match : GAF (HMM E-Value=0.18)
          Length = 234

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 205 NISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQI--KLEQAENS----DD 366
           +I S   ++ K  N     + AD   L   +     +  +I  I   LE + +S    + 
Sbjct: 113 DIVSMDTVIMKIMNYAQTLVDADRTSLFLVDNKTNELYARIFDIGGSLEDSRSSQLQKEI 172

Query: 367 KLPKLTSRADAIATTGEEYQIEDDYNDD 450
           + PK    A  +AT+GE   I D Y+DD
Sbjct: 173 RFPKTKGVAGYVATSGETLNISDAYHDD 200


>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
          Length = 1198

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
 Frame = +1

Query: 97  IRYMDSIAEEMLGTWASECDTIGNFVVSAACYIAQ--GNISSASIILGKSQNPESLRLAA 270
           ++Y +  ++E+  TWAS C    N V     Y+    G +  A +++       + +LA 
Sbjct: 245 VKYDELYSKEIEATWASLCSRWTNNVHEILSYLITLVGVVGHAEVLI------HAKKLAV 298

Query: 271 DLAKLVGHNTFAEHVLE-KIAQIKLEQAENSDDKLPKLTSRADAIATTGEE 420
            +A+     T  E + E K+ +    Q E  DD        ++  +  GEE
Sbjct: 299 YIARAKTERTIEELMEELKLTETVASQFERCDDPPYFRIISSECSSDAGEE 349


>SB_23449| Best HMM Match : IL8 (HMM E-Value=6.2)
          Length = 88

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 208 YSLGLCNKQQIQQNFQSCRIRMPRCLTSLQLC 113
           YS+ L +K +  +N  +CRI + R   SL LC
Sbjct: 28  YSVPLIDKSRAVENGSNCRIPLNRDNQSLALC 59


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 208 ISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQI 336
           ++ AS  L K +NP+  + A DLA ++G N     +LE+ A++
Sbjct: 631 VTDASTELNK-RNPDG-KSAIDLAAMLGRNEVVRELLERGAEV 671


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 171 CCICCLLHSPREYIERLNNTWQISE 245
           CC   +  +P    E+ NN WQI++
Sbjct: 739 CCCADIHRNPEAKTEKKNNDWQITD 763


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,213
Number of Sequences: 59808
Number of extensions: 284833
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)