Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B07
(451 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)... 59 6e-09
BC014147-1|AAH14147.2| 921|Homo sapiens GEMIN5 protein protein. 59 6e-09
BC008776-1|AAH08776.2| 921|Homo sapiens GEMIN5 protein protein. 59 6e-09
AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin... 59 6e-09
AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein. 58 1e-08
AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein. 32 1.0
AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein. 32 1.0
BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein. 31 1.8
BC065521-1|AAH65521.1| 472|Homo sapiens NIN protein protein. 31 1.8
AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein. 31 1.8
AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein. 31 1.8
AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein. 31 1.8
AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein. 31 1.8
AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein. 31 1.8
>BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)
associated protein 5 protein.
Length = 1508
Score = 59.3 bits (137), Expect = 6e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 ARGTFLSIHDVKGAVKTLAEARLFKEAYILC--RIRYMDSIAEEMLGTWASECDTIGNFV 174
A LSIH V AV+ L ++EA + R+R D + +++ +W + + G++
Sbjct: 981 AASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYA 1040
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQ 333
V+A CY+ A+ +L K + SLR AA+LA +VG + + + + AQ
Sbjct: 1041 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQ 1093
>BC014147-1|AAH14147.2| 921|Homo sapiens GEMIN5 protein protein.
Length = 921
Score = 59.3 bits (137), Expect = 6e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 ARGTFLSIHDVKGAVKTLAEARLFKEAYILC--RIRYMDSIAEEMLGTWASECDTIGNFV 174
A LSIH V AV+ L ++EA + R+R D + +++ +W + + G++
Sbjct: 394 AASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYA 453
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQ 333
V+A CY+ A+ +L K + SLR AA+LA +VG + + + + AQ
Sbjct: 454 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQ 506
>BC008776-1|AAH08776.2| 921|Homo sapiens GEMIN5 protein protein.
Length = 921
Score = 59.3 bits (137), Expect = 6e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 ARGTFLSIHDVKGAVKTLAEARLFKEAYILC--RIRYMDSIAEEMLGTWASECDTIGNFV 174
A LSIH V AV+ L ++EA + R+R D + +++ +W + + G++
Sbjct: 394 AASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYA 453
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQ 333
V+A CY+ A+ +L K + SLR AA+LA +VG + + + + AQ
Sbjct: 454 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQ 506
>AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin5
protein.
Length = 1508
Score = 59.3 bits (137), Expect = 6e-09
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 ARGTFLSIHDVKGAVKTLAEARLFKEAYILC--RIRYMDSIAEEMLGTWASECDTIGNFV 174
A LSIH V AV+ L ++EA + R+R D + +++ +W + + G++
Sbjct: 981 AASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYA 1040
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQ 333
V+A CY+ A+ +L K + SLR AA+LA +VG + + + + AQ
Sbjct: 1041 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQ 1093
>AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein.
Length = 1512
Score = 58.0 bits (134), Expect = 1e-08
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 ARGTFLSIHDVKGAVKTLAEARLFKEAYILC--RIRYMDSIAEEMLGTWASECDTIGNFV 174
A LSIH V AV+ L ++EA + R+R D + +++ +W + G++
Sbjct: 985 AASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLKRDGHYA 1044
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQ 333
V+A CY+ A+ +L K + SLR AA+LA +VG + + + + AQ
Sbjct: 1045 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQ 1097
>AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein.
Length = 1989
Score = 31.9 bits (69), Expect = 1.0
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKL-TSRADAIATTGEEYQIEDDYN 444
H+LE++ Q+ E+ + SD DK KL +S A + + ++YN
Sbjct: 368 EVRHLLERVDQVVREKEKLRSDLDKAEKLKSSMASEVDDHHAAIERRNEYN 418
>AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein.
Length = 2090
Score = 31.9 bits (69), Expect = 1.0
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKL-TSRADAIATTGEEYQIEDDYN 444
H+LE++ Q+ E+ + SD DK KL +S A + + ++YN
Sbjct: 368 EVRHLLERVDQVVREKEKLRSDLDKAEKLKSSMASEVDDHHAAIERRNEYN 418
>BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein.
Length = 1377
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 398
>BC065521-1|AAH65521.1| 472|Homo sapiens NIN protein protein.
Length = 472
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 341 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 400
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 401 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 431
>AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein.
Length = 2073
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALEYELLVTKNSTHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 398
>AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein.
Length = 2069
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALEYELLVTKNSTHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 398
>AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein.
Length = 2029
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 308 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALEYELLVTKNSTHQAALASFKA 367
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 368 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 398
>AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein.
Length = 2096
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 314 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 373
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 374 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 404
>AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein.
Length = 1313
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 EEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNT 300
E +L TW E ++ A + GNI+ + L + + A L
Sbjct: 346 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKA 405
Query: 301 FAEHVLEKIAQIKLEQAE-NSD-DKLPKLTS 387
H+LE++ Q+ E+ + SD DK KL S
Sbjct: 406 EIRHLLERVDQVVREKEKLRSDLDKAEKLKS 436
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,026,457
Number of Sequences: 237096
Number of extensions: 1200491
Number of successful extensions: 2409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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