Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B07
(451 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 32 0.16
At4g09680.1 68417.m01590 expressed protein 29 1.1
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 27 4.4
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 27 4.4
At3g26690.2 68416.m03338 MutT/nudix family protein similar to SP... 27 4.4
At3g26690.1 68416.m03337 MutT/nudix family protein similar to SP... 27 4.4
At1g07740.1 68414.m00835 pentatricopeptide (PPR) repeat-containi... 27 4.4
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 27 5.9
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 27 5.9
At4g23290.2 68417.m03357 protein kinase family protein contains ... 27 7.7
At4g23290.1 68417.m03356 protein kinase family protein contains ... 27 7.7
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 32.3 bits (70), Expect = 0.16
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 220 SIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDDKLPK-LTSRAD 396
++I QN + R AD+ +VGHN+ E + + I EQ EN+ L K L+S
Sbjct: 1228 TLIATLMQNMTAAR--ADVLNIVGHNSSLEEQVRSVENIVREQ-ENTISALQKDLSSLIS 1284
Query: 397 AIATTGEEYQIE 432
A E Q+E
Sbjct: 1285 ACGAAARELQLE 1296
>At4g09680.1 68417.m01590 expressed protein
Length = 1075
Score = 29.5 bits (63), Expect = 1.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = -3
Query: 326 IFSRTCSANVLWPTSLARSAAKRRDSGF*DLPS----IIEALDIFPWAM*QAADTTKFPI 159
+ RT S +VL P L+ A R G +P IEAL + PW +
Sbjct: 443 LHDRTSSIDVLTPDLLSDRNASRICEGHPGMPDCTSVFIEAL-VLPWDL--------ICT 493
Query: 158 VSHSDAQVPNISSAMLSMYLIRHKMYASLNNLASASVFTAP 36
V+ +A PN S + HK + N L S S + P
Sbjct: 494 VTEEEAAAPNFEEHDTSQEIRPHKRCKTNNGLQSQSFLSVP 534
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 407 VAMASALEVNFGNLSSLFSACSSLIWAIFSRTC---SANVLWPT 285
V + L+ F LS S CS L+W ++ + C S V W T
Sbjct: 192 VECSCGLQFCFSCLSESHSPCSCLMWKLWKKKCEDESETVNWMT 235
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 407 VAMASALEVNFGNLSSLFSACSSLIWAIFSRTC---SANVLWPT 285
V + L+ F LS S CS L+W ++ + C S V W T
Sbjct: 232 VGCSCGLQFCFSCLSESHSPCSCLMWKLWKKKCEDESETVNWIT 275
>At3g26690.2 68416.m03338 MutT/nudix family protein similar to
SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 202
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 73 KEAYILCRIRYMDSIAEEMLGTWASECDT 159
KEA LCR +M S EE L A E T
Sbjct: 148 KEALELCRYEWMQSALEEFLRVMAEEGST 176
>At3g26690.1 68416.m03337 MutT/nudix family protein similar to
SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 202
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 73 KEAYILCRIRYMDSIAEEMLGTWASECDT 159
KEA LCR +M S EE L A E T
Sbjct: 148 KEALELCRYEWMQSALEEFLRVMAEEGST 176
>At1g07740.1 68414.m00835 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat;
possible frameshift prevents accurate annotation of the
gene product
Length = 459
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 31 VKGAVKTLAEARLFKEAYILCRIRYMDSIAEEMLGTWASE-CDTIGNFVVSAACYIAQGN 207
+KG A R+ + + CRI DS + AS C T FV A I GN
Sbjct: 354 MKGCKPNAATYRMMIDGF--CRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGN 411
Query: 208 ISSASIIL 231
+ A +L
Sbjct: 412 LDHACFVL 419
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 243 ESGISTFSRRPG*TSRPQYIRRARS 317
ESG+ + +PG T+ PQY RA S
Sbjct: 132 ESGLMSLIEKPGYTALPQYYLRAGS 156
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II family
protein low similarity to KbaY (tagatose-1,6-bisphosphate
aldolase) [Escherichia coli] GI:8895753; contains Pfam
profile PF01116: Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +1
Query: 211 SSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDDKLPKLTSR 390
SS ++I+ S P++ + +L HN + + ++ L+ +E D+++ +
Sbjct: 913 SSGALIVVGSYVPKTTKQVEELQSQ--HNQNLRSIEISVEKVALKSSEVRDEEIRRAVEM 970
Query: 391 ADAIATTGEE 420
ADA G E
Sbjct: 971 ADAFLRAGRE 980
>At4g23290.2 68417.m03357 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 690
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 217 RSIYSLGLCNKQQIQQNFQSC----RIRMPRCLTSLQLCY 110
RSIY++ CNK + N + C RI C +Q+ Y
Sbjct: 192 RSIYAIAQCNKDLTKLNCEKCLQHLRIDNRSCCRGIQVGY 231
>At4g23290.1 68417.m03356 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 600
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 217 RSIYSLGLCNKQQIQQNFQSC----RIRMPRCLTSLQLCY 110
RSIY++ CNK + N + C RI C +Q+ Y
Sbjct: 102 RSIYAIAQCNKDLTKLNCEKCLQHLRIDNRSCCRGIQVGY 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,400,783
Number of Sequences: 28952
Number of extensions: 179104
Number of successful extensions: 507
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -