Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B06
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 29 3.2
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 29 3.2
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 4.2
12_01_0107 - 843820-846335,846400-846511 27 7.3
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500... 27 7.3
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 7.3
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634... 27 9.7
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 27 9.7
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 294 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 473
VE D N+KG G S+ N VAT D + ++++ TEV +A+ + DA +
Sbjct: 254 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGSDNNFTEVQSAAEGKCALSDANLD 311
Query: 474 KTE 482
E
Sbjct: 312 SQE 314
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 87 IGLIKAAPVTEN-NDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 227
I + K+ PV + + KL+V+ E+ EF+ YD+ + VP NS+
Sbjct: 167 IVIFKSPPVLQEVHKGKLVVNGEVRNEEFILEPPSYDMNPVQVPENSV 214
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 99 KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 227
+AAP+ E+ VSS L ++E ++ S D VS P L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 294 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 473
VE D N+KG G S+ N VAT D + +++ TEV +A+ + DA +
Sbjct: 168 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGFDNNFTEVQSAAEGKCTLSDANLD 225
Query: 474 KTE 482
E
Sbjct: 226 SQE 228
>02_05_1034 -
33649634-33649651,33649699-33649811,33649938-33650029,
33650212-33650321,33650444-33650517,33650877-33650950,
33651091-33651158
Length = 182
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 405 NDDTTEVYFSAKDGIYVFDAKTNK 476
N D + Y KDG +FDA T K
Sbjct: 19 NQDNSLFYVGTKDGFRIFDAHTGK 42
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 91 PIKNTTPKKSVSCILVSC 38
PIKN TPK+S S + SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352
>03_02_0197 +
6337212-6337278,6339261-6340517,6340599-6340626,
6340735-6340897
Length = 504
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 324 KEYKGLYSLKNGVATKILE-TGTDASATNDDTTEVYFSAKDG 446
++Y GL+ + NG+ L TG+ ND T + Y A++G
Sbjct: 330 EKYWGLFDM-NGIPAYTLHLTGSGVLLANDTTNQTYCVAREG 370
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 93 LIKAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSL 206
L+ +AP N KLI +SE F N+ V+ ++++L
Sbjct: 263 LLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNL 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,953,001
Number of Sequences: 37544
Number of extensions: 198584
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -