Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B06
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   2.5  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        29   2.5  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)        27   7.5  
SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)                 27   9.9  
SB_12606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 357 GVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIG 515
           G+    +    +++A  D ++  YF AKD IY F  K    E +     ++ G
Sbjct: 84  GIVFVSINNTNESNAAVDVSSGPYFPAKDRIYSFQLKGKSKEPFSLTIQTVTG 136


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 306  VNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNK 476
            V D    E + + S  N    +++++ +DA     +N D   V  S  D I V D+ ++ 
Sbjct: 1233 VMDSNSDEIRAMDS--NSDEIRVMDSNSDAIRVMDSNSDAIRVMDSYSDEIRVMDSNSDA 1290

Query: 477  TEKYGTNTDSLIGIVKTNGSDV 542
                G+N+D+ I ++ +N  ++
Sbjct: 1291 IRVMGSNSDA-IRVMDSNSDEI 1311



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 327  EYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTN 497
            E + +YS  N  A +++++ +DA     +N D   V  S  D I V D+ ++      +N
Sbjct: 1150 EMREMYS--NSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDEIRVMDSNSDAIRVMDSN 1207

Query: 498  TDSL 509
            +D++
Sbjct: 1208 SDAI 1211



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 354  NGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSL 509
            N  A +++++ +DA     +N D   V  S  D I V D+ +++     +N+D +
Sbjct: 1197 NSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDEIRAMDSNSDEI 1251


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 179 VLDKFVYE*FRRYYELLIIILSNW 108
           +LD F Y  +RR+ +LLI I++ W
Sbjct: 23  ILDVFYYPTWRRFKDLLIAIIAPW 46


>SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 220 LRGTVRLTMSYLDEYWTNSFMNSSDDTM 137
           L+   R T +Y+ E+W+N+F+++ D  +
Sbjct: 59  LKERERTTENYVTEWWSNNFLSARDSVV 86


>SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)
          Length = 149

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 214 GTVRLTMSYLDEYWTNSFMNSSDDTMSFS 128
           GT +  + Y D+ WT ++ N+ D+ M+ +
Sbjct: 77  GTAKKGVDYTDKTWTQNWGNAKDEEMTIT 105


>SB_12606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 214 GTVRLTMSYLDEYWTNSFMNSSDDTMS 134
           GT +  + Y+D  WT ++ N+ D+ M+
Sbjct: 7   GTAKKGVDYVDNTWTQNWGNAKDEEMT 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,011
Number of Sequences: 59808
Number of extensions: 250771
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)