Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B06
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    33   0.18 
U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   2.9  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   2.9  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    27   8.7  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    27   8.7  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    27   8.7  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    27   8.7  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      27   8.7  

>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +3

Query: 306 VNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEK 485
           + D G++E+       +GV   + +         D+     F  KDG  ++  K N TE 
Sbjct: 489 MEDTGQEEWMNFVLEASGVTETVEKMRIAEEKEQDEERRKDFVDKDGRPMYFTKENVTEI 548

Query: 486 YG----TNTDSLIGIVKTNGSD 539
           YG    T  D + GI KT   D
Sbjct: 549 YGEYEATKIDLINGIYKTMSKD 570


>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 193 SYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFIN 92
           S LDE W +S  + SDD++   S  S TG  F N
Sbjct: 40  SILDEKWRSSCSDDSDDSLPVGSYIS-TGQCFFN 72


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 111 VTENNDEKLIVSSELFINEFVQYSSKYDIV 200
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 111 VTENNDEKLIVSSELFINEFVQYSSKYDIV 200
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 363  ATKILETGTDASATNDDTTEVYFSA--KDGIYVFDAKTNKTEKYGTNTDSLIGIV 521
            AT +  +  +AS   + +   + ++  K G   FD  TN +  Y TNTD   GIV
Sbjct: 1501 ATPLTTSQINASTLLNSSPRFFLTSPLKFGRLTFDPNTNYSTYYFTNTDIQKGIV 1555


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 294 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 473
           +E + N K E+++K    L NG  +   +TG    AT+   + V ++A +        +N
Sbjct: 51  LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107

Query: 474 KTEKY 488
            T  Y
Sbjct: 108 TTLNY 112


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 294 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 473
           +E + N K E+++K    L NG  +   +TG    AT+   + V ++A +        +N
Sbjct: 51  LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107

Query: 474 KTEKY 488
            T  Y
Sbjct: 108 TTLNY 112


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 166 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 62
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 240 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 274


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 166 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 62
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 166 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 62
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 255 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 289


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 166 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 62
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,026,018
Number of Sequences: 27780
Number of extensions: 200192
Number of successful extensions: 529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)