Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B06
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.093
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 27.5 bits (58), Expect = 0.093
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 351  KNGVATKILETGTDASATND-DTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKT 527
            KNG    ++   T  SA ND DT  V   +K      +A+ N T     N  + IG    
Sbjct: 980  KNGKPPSVVSRSTQTSANNDKDTNAVVTQSK------EARDNITATKQLNNKARIGNGPI 1033

Query: 528  NGSDV 542
            N SDV
Sbjct: 1034 NQSDV 1038


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 111 LVPLLSIRLKTRHLRSL*AASWYLVKLRT 25
           L+ L ++ L T  +  L A  W L ++RT
Sbjct: 450 LIVLTALGLPTNDISLLFAVDWMLDRIRT 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,741
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)