Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B06
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32235.1 68415.m03939 expressed protein                             29   2.7  
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic...    28   4.6  
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic...    28   4.6  
At5g38690.1 68418.m04678 expressed protein                             27   6.1  
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden...    27   6.1  
At2g12875.1 68415.m01402 hypothetical protein                          27   6.1  
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea...    27   8.1  
At3g27900.1 68416.m03481 hypothetical protein                          27   8.1  

>At2g32235.1 68415.m03939 expressed protein
          Length = 310

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 345 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVK 524
           SL     +  +  G  A+  + D  ++ +  KDG+   D   NK  KYG    S  G VK
Sbjct: 193 SLLGSSRSNAIPEGDLANPESSDANKMLYIIKDGVRELDQWCNKLLKYGEAVSS--GSVK 250

Query: 525 TNGS 536
            + S
Sbjct: 251 QDDS 254


>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 344

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 330 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 458
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 391

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 330 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 458
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At5g38690.1 68418.m04678 expressed protein
          Length = 572

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 297 EADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNK 476
           E  +  K + E       KNG+   I E     S  N +T EVY   ++ I +   K+  
Sbjct: 431 EKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQG 490

Query: 477 TE 482
           ++
Sbjct: 491 SD 492


>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
           identical to ethylene-insensitive3-like2 (EIL2)
           GI:2224929 from [Arabidopsis thaliana]
          Length = 518

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 351 KNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTN 530
           KNG+ T++L            +    + A+DGI  + +KT   E+Y      + GIV  N
Sbjct: 69  KNGLGTRLLLKQQHDDFPEHSSKRTMYKAQDGILKYMSKT--MERYKAQ-GFVYGIVLEN 125

Query: 531 GSDV 542
           G  V
Sbjct: 126 GKTV 129


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KNGVATKILETGTDASATNDDTTE 422
           K GVATK+++ GT A+     +TE
Sbjct: 79  KRGVATKLIDKGTKATTEEPSSTE 102


>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); U3
           snoRNP-associated 55-kDa protein, Homo sapiens,
           gb:NP_004695;  Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) [Podospora anserina]
          Length = 504

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 399 ATNDDTTEVYFSAKDG-IYVFDAKTNKTEKYGTNTDSLI 512
           A +DD +  + ++KDG I  +D  + KT+KY   +D ++
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDEIL 206


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 420 EVYFSAKDGIYVFDAKTNKTEKYGTNTDSLI 512
           E Y   K+G+Y+ D K+N+ E +  +  S +
Sbjct: 103 ETYIKPKNGVYLADVKSNQWEVFVKSCKSFV 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,351
Number of Sequences: 28952
Number of extensions: 176152
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)