Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B05
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    27   0.45 
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    23   4.2  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    23   4.2  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    23   4.2  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    22   9.7  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.7  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 56

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 77 IWFVEPERRGRSTRYSGHAGSRV 9
          +WF  P + G+ +R   H G R+
Sbjct: 6  VWFSHPRKYGKGSRQCAHTGRRL 28


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 195 PPRPXKQ*ARLVKLLTSNIRYLCNV 121
           PP P     +L+KL ++   Y+CNV
Sbjct: 270 PPYPV---TKLIKLASTGYEYVCNV 291


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 5   EEHETPRGRC---SGCSALGAPVQRTIWYIVVIYC 100
           + H +P   C   S C + G+P  R +  +   YC
Sbjct: 165 QNHRSPPASCKRLSSCESSGSPSSRVVGSLQGSYC 199


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 89  VIYCKLIYISNTLHKYLILDV 151
           VI C  +Y+   +++YL LDV
Sbjct: 397 VIVCGSLYLLGDMYRYLKLDV 417


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 113 ISNTLHKYLILDVNSFTRRAH 175
           ISN++H Y  L+ NS+    H
Sbjct: 106 ISNSMHMYQFLENNSWKSYYH 126


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 62  VQRTIWYIVVI-YCKLIYISNTLHKYLILDVNSFTRRAHCLXGRGGG 199
           ++R  W+I  + YC  IYI    H+   L  N   R      GR  G
Sbjct: 21  IERGYWFIQCLRYC-FIYIIKKQHRQADLPRNFGMRSKALYIGRSVG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,313
Number of Sequences: 5004
Number of extensions: 11364
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)