Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B05
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328     26   3.6  
10_08_0742 + 20244984-20247008                                         25   6.4  
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79...    25   8.4  

>03_02_0854 -
          11789850-11790524,11790602-11791063,11793119-11793328
          Length = 448

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 56 RRGRSTRYSGHAGSRVPR 3
          RRGRSTR S   G R PR
Sbjct: 40 RRGRSTRASSRRGRRRPR 57


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 79  PYGSLNRSAEGGAPATAATRGLVF 8
           P GSL+    GGAPATA    L +
Sbjct: 434 PNGSLDALLFGGAPATATATALTW 457


>09_01_0043 +
           790859-790873,791410-791603,792521-792605,792719-793075
          Length = 216

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 32  CSGCSALGAPVQRTIWYIVVIYCKLIY--ISNTLHKYLILDVNSF 160
           C    +L  P    IW IV I C ++Y  ++N    Y I+ +  F
Sbjct: 47  CPVGRSLSFPRPMPIWDIVPIICSMLYMTLNNNEKLYKIISLAQF 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,604,001
Number of Sequences: 37544
Number of extensions: 86529
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)