Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B05
         (202 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)                   26   5.5  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)                  25   7.2  
SB_17930| Best HMM Match : Pkinase (HMM E-Value=0)                     25   7.2  

>SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 86  VVIYCKLIYISNTLHKYLILDVNSFTRRAHCL 181
           V+ YC  +Y  N L KYL  D+    +RA C+
Sbjct: 141 VLEYCSNVY-HNALPKYLSDDIERVQKRAFCI 171


>SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)
          Length = 335

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  SGCSALGAPVQRTIWYIVVIYC 100
           SGC  +G  ++R  +Y+V ++C
Sbjct: 158 SGCYFIGWAIKRAEFYVVALFC 179


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 86  QYTIWFVEPERRGRSTRYSGHAGSR 12
           QYT +    E  G S +YSG++  R
Sbjct: 383 QYTSYLANQESSGSSNKYSGNSSKR 407


>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
          Length = 662

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   EEHETPRGRCSGCSALGAPVQRTIWYI 85
           E+ E  R R SGCSAL   V  +  Y+
Sbjct: 306 EDEERSRNRWSGCSALTCVVTPSTCYL 332


>SB_17930| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 286

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 47  ALGAPVQRTIWYIVVIYCKLIYISNTLHKYLIL 145
           AL AP++ TI+ ++++Y + + I    HK  I+
Sbjct: 247 ALTAPLKNTIYAVILLYLRKLSIYIGQHKLKIV 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,001,945
Number of Sequences: 59808
Number of extensions: 91891
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 16,821,457
effective HSP length: 45
effective length of database: 14,130,097
effective search space used: 296732037
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)