Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B04
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    30   1.1  
09_06_0041 - 20440266-20441381                                         29   2.6  
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     29   3.5  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    28   4.6  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    27   8.0  

>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -1

Query: 461 SVLKIIDSLESEQQKERHHKTEETHSLRQ 375
           +VLK   +++ E+QKE   +T+E HSL+Q
Sbjct: 210 AVLKRAVAIQHERQKEFDERTQEVHSLKQ 238


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 319 PGTPPLNNSCSHMPS-WVSPCL 381
           PG PPLNNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 77  QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 199
           ++C+ ++ S  A  + S + HTD           A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404


>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   GCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 118
           G +S+H ++H      + D+PC+Q   L+    C+++
Sbjct: 227 GERSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 149  NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 36
            ++LC C  C E  H  C  E ++      Q+C +  FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,680
Number of Sequences: 37544
Number of extensions: 298886
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)