Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B04
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   1e-18
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       31   0.67 
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         29   3.6  
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)                     29   3.6  
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)                   28   4.7  
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)                   28   6.2  
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)              28   6.2  
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)               28   6.2  
SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)                   27   8.2  
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           27   8.2  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 99  TALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 275
           TA +RP +       +VP +P   + A R FQT+S  +D+DSAAKF              
Sbjct: 61  TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119

Query: 276 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 383
                 FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = -1

Query: 242 STNEFGSRVNVFGDRG-GLEGAHS**LSRCN--WNNLCV-CRHCCEWSHKSCVAEDSSPG 75
           S   +   VN+  D G  L G+HS  + + N  W+     C+  CE  + S      S G
Sbjct: 560 SVTTYRGVVNITCDTGFHLIGSHSR-VCQANGTWSGTTTTCKEKCE-RYPSMDVSQCSMG 617

Query: 74  CRGDQSCGIQHFCVLRGATTDN 9
           C  DQ C   H C   G  T N
Sbjct: 618 CDVDQDCPPNHMCRCDGMQTTN 639


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 96   NTALVRPLAAVPTHTQIVPVAPA 164
            NT LVRPL  +P  T   P +PA
Sbjct: 1221 NTLLVRPLETIPAPTPTTPTSPA 1243


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 99  TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 227
           T LVRPL  +P  T   P +PA  ++    +T    K+  + A
Sbjct: 241 TLLVRPLETIPAPTPTTPTSPATPASGPPIRTPIPVKETSTTA 283


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 155 NWNNLCVCRHCC-EWSHKSCVAEDSSPGCRGDQSCGIQ 45
           NW     C   C ++  + C AED +  C G    GI+
Sbjct: 652 NWGAFGPCSETCYKYRQRFCTAEDKAANCPGADMFGIE 689


>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 363
           P+R +    +PS + +  TPPL  +C + PS
Sbjct: 283 PQRSMSILPLPSEVRVDTTPPLRGACRYYPS 313



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 271 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 363
           P+R +    +PS   +  TPPL  +C + PS
Sbjct: 221 PQRSMSILPLPSGARVDTTPPLREACRYYPS 251


>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 461

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 227
           T LVRPL   P      P +PA  ++V   +T    K+  S A
Sbjct: 19  TLLVRPLETTPAPAPTTPTSPATPASVAPIRTPIPLKETPSPA 61


>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
          Length = 111

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 134 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 36
           C  C EW H  C+    S G + ++S GI++ C
Sbjct: 62  CDRCDEWFHGDCIGITMSQGRQMEKS-GIEYNC 93


>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 58  STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 98


>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 640 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 680


>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 48  STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 88


>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 682

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 639 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 679


>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
          Length = 246

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 203 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 243


>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
          Length = 195

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 212
           S T +  P+AA P  TQ VP+A  +     R  QT S   D
Sbjct: 152 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 192


>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
          Length = 451

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 295 SVPSSLVM-PGTPPLNNSCSHMPSWVSPCLRLWVS 396
           +VP +++  PG P  NN  S MPS +SP L  +V+
Sbjct: 66  NVPYAVIPNPGVPLGNNFSSVMPSTMSPSLPFFVA 100


>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 152 WNNLCVCRHCCEWSHKSCV 96
           W   C+CR   +W H+SC+
Sbjct: 40  WVKPCLCRGTTKWVHQSCL 58


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 203
           +N+ ++ PL +VP +T ++P   A  +A  T   + V
Sbjct: 78  ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 114



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 93  SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 203
           +N+ ++ PL +VP +T ++P   A  +A  T   + V
Sbjct: 480 ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,263
Number of Sequences: 59808
Number of extensions: 368721
Number of successful extensions: 1455
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)