Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B04
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    32   0.24 
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    31   0.41 
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    31   0.41 
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    31   0.41 
At2g36420.1 68415.m04471 expressed protein                             29   2.2  
At1g69280.1 68414.m07943 expressed protein                             29   2.9  
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac...    28   3.8  
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim...    28   3.8  
At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate synth...    28   5.1  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    28   5.1  
At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c...    27   6.7  
At5g04310.1 68418.m00423 pectate lyase family protein similar to...    27   6.7  
At2g19590.1 68415.m02288 1-aminocyclopropane-1-carboxylate oxida...    27   6.7  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +3

Query: 294 FGSLIIGYARNPSLKQQLFSYAILGFALSE 383
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 143 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVL 30
           LC  + C +  H+SCV +DSS    GD    + H C L
Sbjct: 36  LCDFKDCPKVYHESCVEKDSSASKNGDSYICMWHSCYL 73


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 338 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 162
           F  G+P G T   GT Y  N   G   S     +TN FG  V   G  GG   +    ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315

Query: 161 RCNWNN 144
           R  W N
Sbjct: 316 RNLWGN 321


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 338 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 162
           F  G+P G T   GT Y  N   G   S     +TN FG  V   G  GG   +    ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315

Query: 161 RCNWNN 144
           R  W N
Sbjct: 316 RNLWGN 321


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 158 CNWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATT 15
           CN    C   H  + +  +C    SS GCR  +SC   H   +R  TT
Sbjct: 741 CNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSH--AMRRRTT 786


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 CSVLKIIDSLESEQQKERHHKTE 396
           CS + ++D LE E++ E HH+ E
Sbjct: 250 CSPVSVLDPLEEEEEDEDHHQHE 272


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 158 CNWNNLCVCRHCCEWSHKSCVAEDSS 81
           C++N+ C    CC WS  SC    SS
Sbjct: 344 CDYNSSCGWLFCCHWSCWSCCCCSSS 369


>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
           homology (BAH) domain-containing protein contains Pfam
           domain, PF00628: PHD-finger and PF01426: BAH domain
          Length = 228

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
 Frame = -1

Query: 296 EYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRC----NWNNLCV-C 132
           E +    S SSY+       ++F  R       G  +        +C    N ++L V C
Sbjct: 98  EGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQC 157

Query: 131 RHCCEWSHKSCV 96
             C EW H SC+
Sbjct: 158 EECSEWFHPSCI 169


>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 618

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -1

Query: 287 SNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVCRHC-CE-- 117
           S TR G ++S+C  + T+     +   GD  GL+      +  C   + C C  C C+  
Sbjct: 478 SETRKGLTFSSCSDSETSGCRCPLGFLGD--GLKCED---IDECKEKSACKCDGCKCKNN 532

Query: 116 WSHKSCVAEDSSPGCRGDQSC 54
           W    C   ++S   + + +C
Sbjct: 533 WGGYECKCSNNSIYMKEEDTC 553


>At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           1-aminocyclopropane-1-carboxylate synthase, Arabidopsis
           thaliana, GI:940370 [S71174]
          Length = 469

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 498 LLSGVDGRGIECVETSSSSNAWTDV 572
           L+SG++  GIEC+++++    W D+
Sbjct: 340 LVSGLEAAGIECLKSNAGLFCWVDM 364


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 116 WSHKSCVAEDSSPGCR 69
           W H+SC++E+SS  CR
Sbjct: 181 WGHQSCISEESSIICR 196


>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
           cellulase family protein cellulase (EC 3.2.1.4)
           precursor - Xanthomonas campestris pv. campestris,
           PIR:JH0158
          Length = 488

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 329 GVPGITNDEGTEYRSNTRSGSSYSNCRCA 243
           G P I ++ GT+ R    SG+ Y NC  A
Sbjct: 304 GFPLILSEFGTDQRGGDMSGNRYMNCLVA 332


>At5g04310.1 68418.m00423 pectate lyase family protein similar to
           pectate lyase  GP:14531296 from [Fragaria x ananassa]
          Length = 518

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 332 GGVPGITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGG 192
           G  PGITN  GT  R  ++SG +       S ++ G    +FG+  G
Sbjct: 446 GSFPGITNGGGTITRGYSKSGPAGGG--SGSDSDDGLFTLIFGNNSG 490


>At2g19590.1 68415.m02288 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative similar to ACC oxidase
           [Cucumis melo][GI:1183898]
          Length = 310

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 458 VLKIIDSLESEQQKERHHKTEETHSLRQGETQDGI*EQLLF 336
           V K+I+S   E  KE+ +++E   +L +G+T D   E   F
Sbjct: 56  VKKMINSHYEEHLKEKFYQSEMVKALSEGKTSDADWESSFF 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,104
Number of Sequences: 28952
Number of extensions: 232939
Number of successful extensions: 739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)