Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B03
         (523 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.31 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   6.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 428 SDTFATLTTLNLTPGMSPTAWPLRPNPATNTSS 330
           +DT+ TL T  L  G     WP +P   T  SS
Sbjct: 52  TDTYPTLETCRLVCGKYGALWP-QPTSVTKISS 83


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 364 GHAVGDIPGVR 396
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 324 GER*GVSCRIRS*RPRCW 377
           GE   V+C+  + +P CW
Sbjct: 869 GEYKCVTCKCENGKPTCW 886


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 329 FSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAE 228
           F+ +W +  +RGT     LP   +C +  L +++
Sbjct: 3   FAELWKKIRNRGTPPKFELPTTHNCLKKVLLLSQ 36


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 114 CRPIAARDDDSRACAPCEYPEVYPLR*REHDP 19
           CR     D  ++ C PC   E    R   H P
Sbjct: 574 CRARYGLDQQNQWCKPCRPREQLTWRRNFHGP 605


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 114 CRPIAARDDDSRACAPCEYPEVYPLR*REHDP 19
           CR     D  ++ C PC   E    R   H P
Sbjct: 466 CRARYGLDQQNQWCKPCRPREQLTWRRNFHGP 497


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,734
Number of Sequences: 336
Number of extensions: 3008
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)