Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B03
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 195 3e-51
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 195 3e-51
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 49 5e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.24
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 6.8
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 9.0
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 195 bits (476), Expect = 3e-51
Identities = 90/115 (78%), Positives = 104/115 (90%)
Frame = +1
Query: 124 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 303
K +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29 KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88
Query: 304 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
GCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 89 GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 45.2 bits (102), Expect = 6e-06
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 42 MGKPRGIRTARKHVNHRREQRWADKEFK 125
MGKP G+ ARK NHRRE+RWAD +K
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYK 28
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 195 bits (476), Expect = 3e-51
Identities = 90/115 (78%), Positives = 104/115 (90%)
Frame = +1
Query: 124 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 303
K +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29 KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88
Query: 304 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
GCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 89 GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 45.2 bits (102), Expect = 6e-06
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 42 MGKPRGIRTARKHVNHRREQRWADKEFK 125
MGKP G+ ARK NHRRE+RWAD +K
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYK 28
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.8 bits (111), Expect = 5e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +1
Query: 166 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 345
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 346 AGFGRKGHAVGDIPGVRFKVVK 411
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 446 SLYRARSDTFATLTTLNLTPGMSPTAWP 363
S Y+ + DT+AT TLN PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -3
Query: 446 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 318
++Y + + +F T ++++ G S L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/86 (19%), Positives = 47/86 (54%)
Frame = -3
Query: 515 LPSAAAGQSLITM*TYDLGLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNT 336
+P++++ ++ T G+S S+ TF++++++ + SP++ L + ++ +
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSI----PSTFSSVSSILSSSTSSPSSTSLSISSSSTS 600
Query: 335 SSFSSMWLRQPSRGTNAVTFLPFLMS 258
S+FSS PS +++++ ++S
Sbjct: 601 STFSSASTSSPSSISSSISSSSTILS 626
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -3
Query: 152 AFHLVPMWAFEFLVGPSLLATMIHVLARRANTPRFTHYDSANTILV 15
+F VP+ + L+G SLL ++I+V+ +R + + Y++ N +LV
Sbjct: 69 SFAQVPLEEYLNLLGHSLLTSIIYVMLKRRFYEQ-SVYNAKNGMLV 113
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 295 PRDGCLNHIEENDEVLVAGFGRKGHAVG 378
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,566
Number of Sequences: 5004
Number of extensions: 47133
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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