Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B03
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 178 2e-45
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 176 1e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.027
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.1
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8) 28 5.4
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5) 27 9.4
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 27 9.4
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 178 bits (434), Expect = 2e-45
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = +1
Query: 124 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 303
KAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP D
Sbjct: 28 KAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPND 87
Query: 304 GCLNHIEENDEVLVAGFGRKGHAVGDIPGV 393
GCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 88 GCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +3
Query: 48 KPRGIRTARKHVNHRREQRWADKEFKSPH-GYEMEGEP 158
KPRG+RTARK +HRR+Q+W DK +K H G ++ P
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANP 39
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 176 bits (428), Expect = 1e-44
Identities = 81/91 (89%), Positives = 89/91 (97%)
Frame = +1
Query: 196 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 375
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112
Query: 376 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 181 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 297
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 63 RTARKHVNHRREQRWADKEF--KSPHGYEMEGEPLRWCISC*GHRPRKS 203
+TA H ++R + W + + +S HG MEG P+ W +S G P+ S
Sbjct: 62 QTAHCHRLYKRCKYWVLEHYQARSQHGTRMEGVPVCWYVSVWGLSPQVS 110
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 398 NLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGC 219
N TP + P T+TSS + P++GT + P + T T L + C
Sbjct: 476 NPTPSVESDDMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTTTQLTKTDDAC 535
Query: 218 LASTPT 201
++P+
Sbjct: 536 EPNSPS 541
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 170 APPKGFAFHLVPMW 129
APPKG+ F +VP+W
Sbjct: 911 APPKGYRFLIVPLW 924
>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
Length = 293
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 377 PTAWPLRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 273
P W PN T S WL QP++GT+A VT+L
Sbjct: 138 PCTWLAPPNKGT---SAPVTWLAQPNKGTSAPVTWL 170
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 380 SPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 282
+P W +PN T S WL P++GT+A+
Sbjct: 151 APVTWLAQPNKGT---SAPVTWLAPPNKGTSAI 180
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +1
Query: 115 RNSKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ------LIKNGK 276
R+ K H+ K F S +GI E G+ + +R C Q + K
Sbjct: 1159 RSLKDHISCAIKCLVFHNLSQLRGITREICGLRGFAEKAKLRACAEAQSGDSVVFHYDDK 1218
Query: 277 KVTAFVPRDGCLNHIEENDEVLVA 348
+T+ + RD + E DE ++A
Sbjct: 1219 AITSLLDRDQQVMEDEVKDEPMLA 1242
>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
Length = 63
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 304 GCLNHIEENDEVLVAGFGRKGHA 372
G N +EEN +LV G GRKG++
Sbjct: 39 GNANLLEENRLILVTGDGRKGYS 61
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 350 PATNTSSFSSMWLRQPSRG-TNAVTFLPFLMSC--TRTHLRMAEFGC 219
P T TSS SSM+++ S G A F+ S TRT + +A F C
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMATYTSAWSTRTIVLIAVFSC 757
>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 68 GAQARESSSRAAMGRQGIQ 124
G QARE++ R AM RQG++
Sbjct: 2 GRQARENTFRRAMSRQGLE 20
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 68 GAQARESSSRAAMGRQGIQ 124
G QARE++ R AM RQG++
Sbjct: 281 GRQARENTFRRAMSRQGLE 299
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 341 NTSSFSSMWLRQPSRGTNAVTFLPFLM-SCTRTHLRMAEFGCLASTPTFSRTMPLA 177
NT FS + S G T F++ +CTR GC +STP +RT+ A
Sbjct: 1391 NTRLFSGLDKAITSSGRKPYTLYSFILKACTRA-------GCSSSTPASARTLEAA 1439
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,143
Number of Sequences: 59808
Number of extensions: 412564
Number of successful extensions: 1654
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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