Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B03
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   225   2e-59
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   6e-07
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    29   2.7  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   6.2  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   6.2  
U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting...    27   8.1  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  225 bits (549), Expect = 2e-59
 Identities = 102/118 (86%), Positives = 111/118 (94%)
 Frame = +1

Query: 115 RNSKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 294
           R  KAH+GTRWK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 26  RYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85

Query: 295 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
           P DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 86  PNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +3

Query: 42  MGKPRGIRTARKHVNHRREQRWADKEFKSPH 134
           MGKP+G+ TARK   HR+EQRW DK +K  H
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAH 31


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +1

Query: 166 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 345
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 346 AGFGRK 363
            G GR+
Sbjct: 129 KG-GRR 133


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 6   GIRHEDRVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKSPHGYEMEGEP 158
           G  +  R R+I+   P+ +      +NH   ++WAD  F+    Y  E  P
Sbjct: 74  GSSYRIRTRSIIKFGPKTLLGRFVRMNHEHRRQWADWYFEEQDEYFFERVP 124


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 283 TAFVPRDGCLNHIEEN 330
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 426 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 289
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 426 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 289
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting
           protein protein 15 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 322 EENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS*VYIVISD*PA 501
           +E +E+   GFG +  +  ++ G  +   +V N S   L K  K  PR+  Y  I D   
Sbjct: 53  QEKEEIRFGGFGDRAGSGVELTGFNWSGGEVIN-SPQQLPKAIK--PRTMFYSPIGDGTV 109

Query: 502 AADGRRL 522
           AADG  L
Sbjct: 110 AADGYEL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,284
Number of Sequences: 27780
Number of extensions: 283790
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)