Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B03
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 209 1e-54
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 201 2e-52
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.067
At3g17900.1 68416.m02280 expressed protein 28 4.4
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 4.4
At2g44390.1 68415.m05521 DC1 domain-containing protein EST match... 28 4.4
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 28 4.4
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 5.8
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ... 27 7.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.7
At1g35560.1 68414.m04415 TCP family transcription factor, putati... 27 7.7
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 7.7
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 27 7.7
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 209 bits (510), Expect = 1e-54
Identities = 95/115 (82%), Positives = 106/115 (92%)
Frame = +1
Query: 124 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 303
K+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP D
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 304 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
GCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 42 MGKPRGIRTARKHVNHRREQRWADKEFKSPH 134
MGK RG+ RK R QRWADK++K H
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSH 31
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 201 bits (491), Expect = 2e-52
Identities = 93/115 (80%), Positives = 104/115 (90%)
Frame = +1
Query: 124 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 303
K++ G WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP D
Sbjct: 29 KSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 304 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 468
GCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 42 MGKPRGIRTARKHVNHRREQRWADKEFK 125
MGK RG+ RK R QRWADK +K
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYK 28
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 33.9 bits (74), Expect = 0.067
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +1
Query: 217 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 396
K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query: 397 FKVVK 411
++
Sbjct: 95 SHCIR 99
>At3g17900.1 68416.m02280 expressed protein
Length = 838
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 249 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 139
N +G LL F E D S+RC EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 293 TNAVTFLPFLMSCTRTHLRMAEFGCLASTPTFSRTMPLA*DAPPKGFA 150
+N T FL+ + TH+ + EFG +T T+ +P A +PP A
Sbjct: 2161 SNHPTMPLFLVGSSNTHIYLWEFGNERATATYG-VLPAANVSPPYALA 2207
>At2g44390.1 68415.m05521 DC1 domain-containing protein EST matches
across the predicted intron; maybe a pseudo gene; highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 209
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 156 VRLPSRTHVGF*IPCRPIAARDDDSRACAPCE 61
V PS H P R ARD+D C+ CE
Sbjct: 7 VNRPSVRHASHNHPLRVFKARDEDEVVCSGCE 38
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 156 VRLPSRTHVGF*IPCRPIAARDDDSRACAPCE 61
V PS H P R ARD+D C+ CE
Sbjct: 7 VNRPSVRHASHNHPLRVFKARDEDEVVCSGCE 38
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 94 ASSDGPTRNSKAHMGTRWKANPFGGASHAKGIVLE 198
+SS GP+ ++ G KA+ FG SH GIVLE
Sbjct: 300 SSSSGPSSSTAPPSG---KASAFGFNSHGIGIVLE 331
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 94 ASSDGPTRNSKAHMGTRWKANPFGGASHAKGIVLE 198
+SS GP+ ++ G KA+ FG SH GIVLE
Sbjct: 324 SSSSGPSSSTAPPSG---KASAFGFNSHGIGIVLE 355
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 356 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 249
P PA++T SFSS P S ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 250
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 162 EGVRLPSRTHVGF*IPCRPIAARDDDSRACAPCE 61
+ VR PS H P R A+++D AC+ CE
Sbjct: 14 QSVRHPSHNH-----PLRVFKAKEEDETACSGCE 42
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 426
K KK + VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At1g35560.1 68414.m04415 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
[Oryza sativa]
Length = 341
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 407 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 312
+T + T M P W L P PA +T+ S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 413 TLTTLNLTPGMSPTAWP 363
T TT+N +PG P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -3
Query: 416 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLR 237
A LN TP + + PL P T T+S + QP A + L S R +
Sbjct: 601 AASPNLNHTPSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWK 660
Query: 236 MAEFGCLASTPTFSRTMPL 180
G L S S+ MPL
Sbjct: 661 YGLCGTLGSFIAGSQ-MPL 678
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,332,643
Number of Sequences: 28952
Number of extensions: 268098
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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