Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B02
(318 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 87 3e-18
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 52 8e-08
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-07
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 48 1e-06
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 4e-06
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-06
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 5e-06
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-06
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 46 5e-06
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-05
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-05
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 8e-05
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 8e-05
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 2e-04
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 3e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 40 3e-04
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 40 3e-04
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 40 4e-04
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 4e-04
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 40 4e-04
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 39 0.001
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 38 0.002
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 38 0.002
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 35 0.016
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 33 0.050
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.050
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.066
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 32 0.088
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 30 0.35
SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08) 27 4.4
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20) 27 4.4
SB_59719| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_58643| Best HMM Match : RhoGAP (HMM E-Value=3.7) 26 5.8
SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_39046| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 26 5.8
SB_34933| Best HMM Match : RVT_1 (HMM E-Value=3.5e-08) 26 5.8
SB_18777| Best HMM Match : RhoGAP (HMM E-Value=4.9) 26 5.8
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2) 26 5.8
SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4) 26 5.8
SB_3299| Best HMM Match : RhoGAP (HMM E-Value=2.2) 26 5.8
SB_55944| Best HMM Match : RVT_1 (HMM E-Value=1.6e-11) 26 5.8
SB_53374| Best HMM Match : RhoGAP (HMM E-Value=1.2) 26 5.8
SB_36799| Best HMM Match : DUF74 (HMM E-Value=1.9) 26 5.8
SB_21912| Best HMM Match : RhoGAP (HMM E-Value=3.7) 26 5.8
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_267| Best HMM Match : RhoGAP (HMM E-Value=3.7) 26 5.8
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20) 26 7.6
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 26 7.6
SB_23136| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 87.0 bits (206), Expect = 3e-18
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXX 188
KK K + PKR MSAYMLWLN R++IK ++PG+ VTE++K GEMWK++ DKS W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 189 XXXXXQYAKDLESYN 233
+Y + ++ YN
Sbjct: 594 AIEKQKYVQRMKEYN 608
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 52.4 bits (120), Expect = 8e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 179
+K +K + PK P++ Y+ +LN RE+++SE+P L E+ + G MW + K ++
Sbjct: 168 KKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFL 227
Query: 180 XXXXXXXXQYAKDLESY 230
+Y K+LE Y
Sbjct: 228 EEAEKDKERYMKELEEY 244
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 49.6 bits (113), Expect = 5e-07
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLW---LNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 170
RKK +KPK P++ Y+ + LNS RE +K +HP L EI K G+ W S+ ++K
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQ 244
Query: 171 IWXXXXXXXXXQYAKDLESY 230
+ +Y ++L +Y
Sbjct: 245 KFLDEAEEDKKRYVEELRAY 264
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 24 TDKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
T KP KRPM+A+M+W +AR ++ ++P L E++K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 46.8 bits (106), Expect = 4e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
+K+ K +KPKR +SAY ++N R+ +K ++P ++K GEMW M D
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTD 145
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXX 191
K +KPK SAY +L RE+++ E + + +K E WK+M ++K +
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 192 XXXXQYAKDLESY 230
++ ++++SY
Sbjct: 67 KDKERFKEEMQSY 79
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
KK KRPM+A+M+W R ++ EHP + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 179
++K K+ +P +P+SAY ++ + I+ ++P + EIAK G+MW+++ + K ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYH 975
Query: 180 XXXXXXXXQYAKDLE 224
+Y K ++
Sbjct: 976 CKHETAKAEYQKAMD 990
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 322 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 5 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
K D+ KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 44.4 bits (100), Expect = 2e-05
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
K K KRPM+++M+W SAR ++ ++P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
K D KRPM+AYM+W R +I E P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 42.3 bits (95), Expect = 8e-05
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 42.3 bits (95), Expect = 8e-05
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKS-EHPGLKVTEIAKKGGEMWKSMKDK 167
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 3 MRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
MR++N K KRPM+A+M+W R I +P EI+ + GE+W + +
Sbjct: 93 MRQENNA--KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSE 145
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 40.7 bits (91), Expect = 3e-04
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 27 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
D KRP++++M+W R + E+P ++ EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 40.7 bits (91), Expect = 3e-04
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
+K+ T++ KRPM+A+M+W R ++ +P L E++K G W+++
Sbjct: 358 EKDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQY 209
KRPM+++M+W R + E+P L EI+K G+ W + KDK + ++
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIRH 154
Query: 210 AKDLESY 230
K+ +Y
Sbjct: 155 MKEHPNY 161
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 40.3 bits (90), Expect = 3e-04
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 33 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
P++P+ YM + +Q+K+++P K+ +I K G+MW+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 185
KNK + + P+SA+ LW N AR+ + +P + ++ KK WK + K K W
Sbjct: 221 KNKYPNV-EPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKK 279
Query: 186 XXXXXXQYAKDLE 224
+Y K ++
Sbjct: 280 EKTEMRKYQKKIK 292
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 27 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
++PK P+++Y + R ++ ++P LK TE+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
KRPM+ +M+W R QI E+PG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQI--KSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 185
K DKPKRP +AY L+L + R+++ K+ G K+ +A GE W+ M +DK +
Sbjct: 572 KDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWREMSDEDKKPYTIQ 628
Query: 186 XXXXXXQYAKDLESY 230
+Y K +E +
Sbjct: 629 EAEERNKYEKVMEEW 643
Score = 35.1 bits (77), Expect = 0.012
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 6 RKKNKMTDKP--KRPMSAYMLWLNSAREQIKSEH-----PGLKVTEIAKKGGEMWKSMKD 164
RKK D P KR SAY+ + + R ++K++ P K E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 165 K 167
+
Sbjct: 545 E 545
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +3
Query: 24 TDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
++K KRP++A++LW R I +E+P + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIW 176
+ ++ D+ + + + LWL R+QI+ E+P + ++ K + WK + +K +W
Sbjct: 321 RPDEKADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVW 378
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
KRPM+A+M+W + R ++ ++P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 34.7 bits (76), Expect = 0.016
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
+ ++ D+ + + + LWL R+QI+ E+P + ++ K + WK +
Sbjct: 28 RPDEKADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 33.1 bits (72), Expect = 0.050
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 155
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 33.1 bits (72), Expect = 0.050
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 155
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 32.7 bits (71), Expect = 0.066
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 30 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK 161
K KRP A+ + +++K E+P LK EI K + W +++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE 348
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 32.3 bits (70), Expect = 0.088
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
K PM+A+M+ R+ S +PG+ +E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 27 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
D +RPM+A+M++ R + +HP ++K GE W ++
Sbjct: 514 DHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYAL 557
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 3 MRKK-NKMTDKPKRPMSAYMLWLNSAREQIKSEHPG 107
MRK +++ KRPM+A+ML+ R +I HPG
Sbjct: 20 MRKTPSQLQQLNKRPMNAFMLFAKRYRLEITQAHPG 55
>SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)
Length = 241
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 192 WLLSLPKYFYLSLISTFHLLFWLF 121
WLL L K L + T LFWLF
Sbjct: 151 WLLPLKKKESLEVAQTIEPLFWLF 174
>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
Length = 551
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 228 TILSL*HTVL*PWLLSLPKYFYLSLISTFHLLFW 127
T+L L H L + L F+L ++S FHL F+
Sbjct: 46 TLLRLQHNFLWAVVYLLDASFFLDIVSKFHLAFF 79
>SB_59719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 20 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 56
>SB_58643| Best HMM Match : RhoGAP (HMM E-Value=3.7)
Length = 295
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 103 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 139
>SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 56 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 92
>SB_39046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 10 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 46
>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 494
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 210 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 246
>SB_34933| Best HMM Match : RVT_1 (HMM E-Value=3.5e-08)
Length = 390
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 198 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 234
>SB_18777| Best HMM Match : RhoGAP (HMM E-Value=4.9)
Length = 260
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 68 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 104
>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 712
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 520 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 556
>SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4)
Length = 248
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 56 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 92
>SB_3299| Best HMM Match : RhoGAP (HMM E-Value=2.2)
Length = 248
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 56 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 92
>SB_55944| Best HMM Match : RVT_1 (HMM E-Value=1.6e-11)
Length = 387
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 195 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 231
>SB_53374| Best HMM Match : RhoGAP (HMM E-Value=1.2)
Length = 248
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 56 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 92
>SB_36799| Best HMM Match : DUF74 (HMM E-Value=1.9)
Length = 251
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 68 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 104
>SB_21912| Best HMM Match : RhoGAP (HMM E-Value=3.7)
Length = 238
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 103 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 139
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 971 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 1007
>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 552 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 588
>SB_267| Best HMM Match : RhoGAP (HMM E-Value=3.7)
Length = 284
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILGXXXXXXXXXXXXC 147
S CQPI G +V E+ +S +LG C
Sbjct: 92 SSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHC 128
>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILG 108
S CQPI G +V E+ +S +LG
Sbjct: 579 SSQCQPIAVGGSVIESVTSFKLLG 602
>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
Length = 2232
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 90 KSEHPGLKVTEIAKKGGEMWKSMKDKSI 173
K + GLKV + KKG E K + K++
Sbjct: 1315 KKKKKGLKVGRVEKKGEEEGKKLSQKAV 1342
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILG 108
S CQPI G +V E+ +S +LG
Sbjct: 46 SSQCQPIAVGGSVIESVTSFKLLG 69
>SB_23136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 37 SGLCQPICCGSTVPENRSSLNILG 108
S CQPI G +V E+ +S +LG
Sbjct: 103 SSQCQPIAVGGSVIESVTSFKLLG 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,561,249
Number of Sequences: 59808
Number of extensions: 133887
Number of successful extensions: 446
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -