Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B02
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    20   8.3  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 60  LWLNSAREQIKSEHPGLKV 116
           +W  + R + K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 135 GGEMWKSMKDK 167
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 278 LLRLLATSFTTTTIGIVRF*VFSILFFSL 192
           LL+ L    +T    ++RF  FS+L F+L
Sbjct: 123 LLKKLYGGNSTIIFLLIRFKSFSLLNFNL 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,024
Number of Sequences: 438
Number of extensions: 1362
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)