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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B02
         (318 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro...    61   1e-10
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb...    56   7e-09
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa...    54   2e-08
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa...    54   2e-08
At3g28730.1 68416.m03587 structure-specific recognition protein ...    52   6e-08
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb...    52   6e-08
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    51   1e-07
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro...    47   3e-06
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    42   7e-05
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro...    36   0.004
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro...    36   0.004
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro...    36   0.008
At5g23320.1 68418.m02728 isoprenylcysteine carboxyl methyltransf...    27   2.1  
At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    27   2.1  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    27   2.7  
At3g18770.1 68416.m02382 expressed protein                             27   2.7  
At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    26   6.3  
At3g45680.1 68416.m04937 proton-dependent oligopeptide transport...    26   6.3  
At3g44370.1 68416.m04767 expressed protein weak similarity to At...    26   6.3  
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    26   6.3  
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    25   8.3  
At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene...    25   8.3  
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    25   8.3  
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ...    25   8.3  

>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
           protein similar to high mobility group protein 2 HMG2
           [Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 241

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 179
           +K +  ++KPKRP++A+ ++++  R+  KSEH G    + AK GGE WKS+  ++K ++ 
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYL 165

Query: 180 XXXXXXXXQYAKDLES 227
                   +Y K LES
Sbjct: 166 DKAAELKAEYNKSLES 181


>At1g20696.1 68414.m02593 high mobility group protein beta2
           (HMGbeta2) / HMG protein beta2 nearly identical to HMG
           protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
          Length = 141

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
 Frame = +3

Query: 18  KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 188
           K  +KPKRP SA+ +++   R   K EHP  K V  + K GGE WKS+ D  K+ +    
Sbjct: 30  KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89

Query: 189 XXXXXQYAKDLESYN 233
                +Y K++++YN
Sbjct: 90  DKRKVEYEKNMKAYN 104


>At3g51880.2 68416.m05690 high mobility group protein alpha
           (HMGalpha) / HMG protein alpha nearly identical to HMG
           protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 185

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 176
           +K  K  +KPKR  SA+ ++L   R   K E+P +K V+ + K GG+ WKSM   +K+ +
Sbjct: 44  KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103

Query: 177 XXXXXXXXXQYAKDLESYN 233
                    +Y K +++YN
Sbjct: 104 EEKAAKRKAEYEKQMDAYN 122


>At3g51880.1 68416.m05689 high mobility group protein alpha
           (HMGalpha) / HMG protein alpha nearly identical to HMG
           protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 178

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 176
           +K  K  +KPKR  SA+ ++L   R   K E+P +K V+ + K GG+ WKSM   +K+ +
Sbjct: 44  KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103

Query: 177 XXXXXXXXXQYAKDLESYN 233
                    +Y K +++YN
Sbjct: 104 EEKAAKRKAEYEKQMDAYN 122


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 182
           KK K  + PKR MS +M +    R+ IK EHPG+   E+ K  G+ W+ M   DK  +  
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613

Query: 183 XXXXXXXQYAKDLESY 230
                  +Y  ++  Y
Sbjct: 614 KAQVDKQRYKDEISDY 629


>At1g20693.1 68414.m02592 high mobility group protein beta1
           (HMGbeta1) / HMG protein beta1 nearly identical to HMG
           protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
          Length = 144

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
 Frame = +3

Query: 18  KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 188
           K  +KPKRP SA+ +++   RE  K E+P  K V  + K  G+ WKS+ D  K+ +    
Sbjct: 33  KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92

Query: 189 XXXXXQYAKDLESYN 233
                +Y K++++YN
Sbjct: 93  EKRKVEYEKNIKAYN 107


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 6   RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSI 173
           +KKN+  D  KPK+P S+Y L+   AR+ +  EHPG+  + +       W  +  ++K +
Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQV 420

Query: 174 WXXXXXXXXXQYAKDLESYN 233
           +          Y K++E YN
Sbjct: 421 YNSKAAELMEAYKKEVEEYN 440



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXX 182
           KK K   KPK+P+SAY+++ N  R  +K E+    V E+AK  GE WK++ +  K+ +  
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQ 295

Query: 183 XXXXXXXQYAKDLESY 230
                   Y +++E Y
Sbjct: 296 MAKKNKEIYLQEMEGY 311



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           +KK K   + KRP + Y+LW      ++K ++P     E +   G  WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170


>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
           protein similar to HMG2B [Homo sapiens] GI:32335;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 456

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
           KK K   KPK P+SA++++ N  R  ++ E+    V E+AK  GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDK 297



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = +3

Query: 6   RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSI 173
           +KKN+  D  KPK+P S+Y L+    R+++  E PG     +       WK  S ++K +
Sbjct: 368 KKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQV 427

Query: 174 WXXXXXXXXXQYAKDLESYN 233
           +          Y K++E+YN
Sbjct: 428 YNGKAAKLMEAYKKEVEAYN 447



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           +KK K   + KRP S+Y+LW      ++K E+P     E +   G  WKS+
Sbjct: 129 KKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179


>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 24  TDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 158
           T  PK+P +A+  +L+  R+Q + E+P +K + EI K  GE WK+M
Sbjct: 60  TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105


>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 148

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
           K K T+K K   S   + +++N  R+  ++++ G  V E +K G EMWKSM +
Sbjct: 53  KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105


>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 149

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
           K K T+K K   S   + +++N  R+  ++++ G  V E +K G EMWKSM +
Sbjct: 54  KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106


>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to SP|O15347|HMG4_HUMAN High
           mobility group protein 4 (HMG-4) (High mobility group
           protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 448

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 12  KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXXX 185
           K +  D PK   S Y  +      ++K  HPG K  +I++  GE+W  +   +K I+   
Sbjct: 256 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGK 314

Query: 186 XXXXXXQYAKDLESY 230
                 +Y  ++E Y
Sbjct: 315 AMEDKERYRTEMEDY 329


>At5g23320.1 68418.m02728 isoprenylcysteine carboxyl
           methyltransferase family protein / ICMT family protein
           similar to SP|O12947 Protein-S isoprenylcysteine
           O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine
           carboxylmethyltransferase) (Farnesyl cysteine carboxyl
           methyltransferase) (FCMT) {Xenopus laevis}; contains
           Pfam profile PF04140: Isoprenylcysteine carboxyl
           methyltransferase (ICMT) family
          Length = 197

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -3

Query: 178 SQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 65
           SQ+LLS I FHIS   LAI++    G S++  S  L++
Sbjct: 14  SQMLLSLIFFHISEYILAITI---HGASNVTLSSLLIT 48


>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 263 ATSFTTTTIGIVRF*VFSILFFSLGCFLFPNTFIFH*FPHFTSFFG 126
           AT  +  T  I    V++ L + L  F+F N+F  +    F SFFG
Sbjct: 7   ATKLSRNTNRITVILVYAFLEWLLMFFIFLNSFFTYFIVKFASFFG 52


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 988

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 170 TFIFH*FPHFTSFFGYFSDFQPRMFRLDLFSGTVEPQHI 54
           + +F  FP F+       DFQ     +DLF+G  EP HI
Sbjct: 810 SLLFRLFPKFSRCSSK-QDFQFPPHLIDLFNGRGEPDHI 847


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = -3

Query: 292 PVFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPPFLAISVT 113
           P+ P F           PL  + S  L+Y S  L  F  +   SF  +  SPP  ++S +
Sbjct: 270 PMSPTFITDYVGSPLADPLKRFPSLPLSYGSPPLLPFQRRHSWSFDRYKASPP--SVSCS 327

Query: 112 FSPGCSDLICSLALLSH 62
            SP  SD   S AL+SH
Sbjct: 328 PSPTRSD---SHALVSH 341


>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 181 SSQILLSFIDFHISPPFLAISVTFSPGC-SDLICSLALLSHSI*ADIGRFGLSVIL 17
           +S +L +F  +HISPP   +    +P C +D + S   L+  I   +  FGL V++
Sbjct: 68  ASLLLHNFCIYHISPPGHELGA--APICPNDSVPSAENLADQILEVLNFFGLGVVM 121


>At3g45680.1 68416.m04937 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 299 FLARFPSLLRLLATSFTTTTIGI 231
           F   FP  LR  ATS T+  IGI
Sbjct: 464 FYGEFPESLRNTATSLTSVVIGI 486


>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 15  NKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 149
           + + ++ K  +S + LW+ S R      HPG         GG +W
Sbjct: 261 SNINNECKYMISCFFLWITSIRRMSLDHHPGF------DSGGALW 299


>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 36  KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSI 173
           KR  +++  +      ++KSE PGL  T+      +MWK   D  +
Sbjct: 179 KRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSPDNPL 224


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 66  LNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKS 170
           ++ A +++  EH  +KVTE A+K   + + +K ++
Sbjct: 664 ISEAEDKVDVEHAPIKVTEAAEKVSMLEEQVKPRT 698


>At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene
           response factor 1 (ERF1) identical to ethylene response
           factor 1 GB:AAD03544 from [Arabidopsis thaliana]
          Length = 218

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 226 DSKSLAYCSLALAAFSSQILLSFIDFHISPPFLAISVTFSPGCSDLI 86
           +  +LAY   A +   S  +L+F    +      I  T+  GCS ++
Sbjct: 116 EEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVV 162


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 27  DKPKRPMSAYMLWLNSAREQIKSEH 101
           DKP+   + Y+LW + +    KS+H
Sbjct: 283 DKPEEEPNVYLLWGDDSTSDQKSKH 307


>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 373

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 215 FSILFFSLGCFLFP 174
           FS+ F  LGCF FP
Sbjct: 15  FSLCFLFLGCFFFP 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,254,336
Number of Sequences: 28952
Number of extensions: 106157
Number of successful extensions: 308
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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