BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_B02 (318 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 61 1e-10 At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 56 7e-09 At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 54 2e-08 At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 54 2e-08 At3g28730.1 68416.m03587 structure-specific recognition protein ... 52 6e-08 At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 52 6e-08 At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 51 1e-07 At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 47 3e-06 At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 42 7e-05 At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 36 0.004 At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 36 0.004 At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 36 0.008 At5g23320.1 68418.m02728 isoprenylcysteine carboxyl methyltransf... 27 2.1 At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 27 2.1 At4g08340.1 68417.m01378 Ulp1 protease family protein contains P... 27 2.7 At3g18770.1 68416.m02382 expressed protein 27 2.7 At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969... 26 6.3 At3g45680.1 68416.m04937 proton-dependent oligopeptide transport... 26 6.3 At3g44370.1 68416.m04767 expressed protein weak similarity to At... 26 6.3 At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 26 6.3 At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 25 8.3 At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene... 25 8.3 At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 25 8.3 At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 25 8.3 >At5g23420.1 68418.m02747 high mobility group (HMG1/2) family protein similar to high mobility group protein 2 HMG2 [Ipomoea nil] GI:1052956; contains Pfam profile PF00505: HMG (high mobility group) box Length = 241 Score = 61.3 bits (142), Expect = 1e-10 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Frame = +3 Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 179 +K + ++KPKRP++A+ ++++ R+ KSEH G + AK GGE WKS+ ++K ++ Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYL 165 Query: 180 XXXXXXXXQYAKDLES 227 +Y K LES Sbjct: 166 DKAAELKAEYNKSLES 181 >At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGbeta2) / HMG protein beta2 nearly identical to HMG protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361 Length = 141 Score = 55.6 bits (128), Expect = 7e-09 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = +3 Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 188 K +KPKRP SA+ +++ R K EHP K V + K GGE WKS+ D K+ + Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89 Query: 189 XXXXXQYAKDLESYN 233 +Y K++++YN Sbjct: 90 DKRKVEYEKNMKAYN 104 >At3g51880.2 68416.m05690 high mobility group protein alpha (HMGalpha) / HMG protein alpha nearly identical to HMG protein (HMGalpha) [Arabidopsis thaliana] GI:2832357; contains Pfam profile PF00505: HMG (high mobility group) box Length = 185 Score = 54.4 bits (125), Expect = 2e-08 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 176 +K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ + Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103 Query: 177 XXXXXXXXXQYAKDLESYN 233 +Y K +++YN Sbjct: 104 EEKAAKRKAEYEKQMDAYN 122 >At3g51880.1 68416.m05689 high mobility group protein alpha (HMGalpha) / HMG protein alpha nearly identical to HMG protein (HMGalpha) [Arabidopsis thaliana] GI:2832357; contains Pfam profile PF00505: HMG (high mobility group) box Length = 178 Score = 54.4 bits (125), Expect = 2e-08 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 176 +K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ + Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103 Query: 177 XXXXXXXXXQYAKDLESYN 233 +Y K +++YN Sbjct: 104 EEKAAKRKAEYEKQMDAYN 122 >At3g28730.1 68416.m03587 structure-specific recognition protein 1 / high mobility group protein / HMG protein nearly identical to SP|Q05153 Structure-specific recognition protein 1 homolog (HMG protein) {Arabidopsis thaliana}; contains Pfam profile PF00505: HMG (high mobility group) box; contains Pfam profile PF03531: Structure-specific recognition protein Length = 646 Score = 52.4 bits (120), Expect = 6e-08 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +3 Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 182 KK K + PKR MS +M + R+ IK EHPG+ E+ K G+ W+ M DK + Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613 Query: 183 XXXXXXXQYAKDLESY 230 +Y ++ Y Sbjct: 614 KAQVDKQRYKDEISDY 629 >At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGbeta1) / HMG protein beta1 nearly identical to HMG protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359 Length = 144 Score = 52.4 bits (120), Expect = 6e-08 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = +3 Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 188 K +KPKRP SA+ +++ RE K E+P K V + K G+ WKS+ D K+ + Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92 Query: 189 XXXXXQYAKDLESYN 233 +Y K++++YN Sbjct: 93 EKRKVEYEKNIKAYN 107 >At4g11080.1 68417.m01800 high mobility group (HMG1/2) family protein similar to SP|P40618 High mobility group protein HMG2A {Gallus gallus}; contains Pfam profile PF00505: HMG (high mobility group) box Length = 446 Score = 51.2 bits (117), Expect = 1e-07 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Frame = +3 Query: 6 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSI 173 +KKN+ D KPK+P S+Y L+ AR+ + EHPG+ + + W + ++K + Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQV 420 Query: 174 WXXXXXXXXXQYAKDLESYN 233 + Y K++E YN Sbjct: 421 YNSKAAELMEAYKKEVEEYN 440 Score = 48.4 bits (110), Expect = 1e-06 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +3 Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXX 182 KK K KPK+P+SAY+++ N R +K E+ V E+AK GE WK++ + K+ + Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQ 295 Query: 183 XXXXXXXQYAKDLESY 230 Y +++E Y Sbjct: 296 MAKKNKEIYLQEMEGY 311 Score = 35.1 bits (77), Expect = 0.010 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158 +KK K + KRP + Y+LW ++K ++P E + G WK + Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170 >At4g23800.1 68417.m03422 high mobility group (HMG1/2) family protein similar to HMG2B [Homo sapiens] GI:32335; contains Pfam profile PF00505: HMG (high mobility group) box Length = 456 Score = 46.8 bits (106), Expect = 3e-06 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = +3 Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167 KK K KPK P+SA++++ N R ++ E+ V E+AK GE WK++ DK Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDK 297 Score = 46.4 bits (105), Expect = 4e-06 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Frame = +3 Query: 6 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSI 173 +KKN+ D KPK+P S+Y L+ R+++ E PG + WK S ++K + Sbjct: 368 KKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQV 427 Query: 174 WXXXXXXXXXQYAKDLESYN 233 + Y K++E+YN Sbjct: 428 YNGKAAKLMEAYKKEVEAYN 447 Score = 40.7 bits (91), Expect = 2e-04 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158 +KK K + KRP S+Y+LW ++K E+P E + G WKS+ Sbjct: 129 KKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179 >At2g34450.1 68415.m04227 high mobility group (HMG1/2) family protein similar to HMG protein [Arabidopsis thaliana] GI:2832361; contains Pfam profile PF00505: HMG (high mobility group) box Length = 151 Score = 42.3 bits (95), Expect = 7e-05 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +3 Query: 24 TDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 158 T PK+P +A+ +L+ R+Q + E+P +K + EI K GE WK+M Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105 >At5g23405.2 68418.m02742 high mobility group (HMG1/2) family protein contains Pfam profile PF00505: HMG (high mobility group) box Length = 148 Score = 36.3 bits (80), Expect = 0.004 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = +3 Query: 12 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164 K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM + Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105 >At5g23405.1 68418.m02741 high mobility group (HMG1/2) family protein contains Pfam profile PF00505: HMG (high mobility group) box Length = 149 Score = 36.3 bits (80), Expect = 0.004 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = +3 Query: 12 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164 K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM + Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106 >At1g04880.1 68414.m00485 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein low similarity to SP|O15347|HMG4_HUMAN High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam profiles PF00505: HMG (high mobility group) box, PF01388: ARID/BRIGHT DNA binding domain Length = 448 Score = 35.5 bits (78), Expect = 0.008 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +3 Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXXX 185 K + D PK S Y + ++K HPG K +I++ GE+W + +K I+ Sbjct: 256 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGK 314 Query: 186 XXXXXXQYAKDLESY 230 +Y ++E Y Sbjct: 315 AMEDKERYRTEMEDY 329 >At5g23320.1 68418.m02728 isoprenylcysteine carboxyl methyltransferase family protein / ICMT family protein similar to SP|O12947 Protein-S isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Farnesyl cysteine carboxyl methyltransferase) (FCMT) {Xenopus laevis}; contains Pfam profile PF04140: Isoprenylcysteine carboxyl methyltransferase (ICMT) family Length = 197 Score = 27.5 bits (58), Expect = 2.1 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = -3 Query: 178 SQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 65 SQ+LLS I FHIS LAI++ G S++ S L++ Sbjct: 14 SQMLLSLIFFHISEYILAITI---HGASNVTLSSLLIT 48 >At5g16720.1 68418.m01958 expressed protein contains Pfam profile PF04576: Protein of unknown function, DUF593 Length = 675 Score = 27.5 bits (58), Expect = 2.1 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 263 ATSFTTTTIGIVRF*VFSILFFSLGCFLFPNTFIFH*FPHFTSFFG 126 AT + T I V++ L + L F+F N+F + F SFFG Sbjct: 7 ATKLSRNTNRITVILVYAFLEWLLMFFIFLNSFFTYFIVKFASFFG 52 >At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 988 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 170 TFIFH*FPHFTSFFGYFSDFQPRMFRLDLFSGTVEPQHI 54 + +F FP F+ DFQ +DLF+G EP HI Sbjct: 810 SLLFRLFPKFSRCSSK-QDFQFPPHLIDLFNGRGEPDHI 847 >At3g18770.1 68416.m02382 expressed protein Length = 625 Score = 27.1 bits (57), Expect = 2.7 Identities = 26/77 (33%), Positives = 35/77 (45%) Frame = -3 Query: 292 PVFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPPFLAISVT 113 P+ P F PL + S L+Y S L F + SF + SPP ++S + Sbjct: 270 PMSPTFITDYVGSPLADPLKRFPSLPLSYGSPPLLPFQRRHSWSFDRYKASPP--SVSCS 327 Query: 112 FSPGCSDLICSLALLSH 62 SP SD S AL+SH Sbjct: 328 PSPTRSD---SHALVSH 341 >At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus}; contains Pfam profile PF03096: Ndr family Length = 346 Score = 25.8 bits (54), Expect = 6.3 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -3 Query: 181 SSQILLSFIDFHISPPFLAISVTFSPGC-SDLICSLALLSHSI*ADIGRFGLSVIL 17 +S +L +F +HISPP + +P C +D + S L+ I + FGL V++ Sbjct: 68 ASLLLHNFCIYHISPPGHELGA--APICPNDSVPSAENLADQILEVLNFFGLGVVM 121 >At3g45680.1 68416.m04937 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 558 Score = 25.8 bits (54), Expect = 6.3 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 Query: 299 FLARFPSLLRLLATSFTTTTIGI 231 F FP LR ATS T+ IGI Sbjct: 464 FYGEFPESLRNTATSLTSVVIGI 486 >At3g44370.1 68416.m04767 expressed protein weak similarity to AtOXA1 [Arabidopsis thaliana] GI:6624207 Length = 338 Score = 25.8 bits (54), Expect = 6.3 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = +3 Query: 15 NKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 149 + + ++ K +S + LW+ S R HPG GG +W Sbjct: 261 SNINNECKYMISCFFLWITSIRRMSLDHHPGF------DSGGALW 299 >At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb|AA595092 come from this gene Length = 234 Score = 25.8 bits (54), Expect = 6.3 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +3 Query: 36 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSI 173 KR +++ + ++KSE PGL T+ +MWK D + Sbjct: 179 KRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSPDNPL 224 >At3g57940.1 68416.m06458 expressed protein contains Pfam profile PF05127: Putative ATPase (DUF699) Length = 1024 Score = 25.4 bits (53), Expect = 8.3 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +3 Query: 66 LNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKS 170 ++ A +++ EH +KVTE A+K + + +K ++ Sbjct: 664 ISEAEDKVDVEHAPIKVTEAAEKVSMLEEQVKPRT 698 >At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene response factor 1 (ERF1) identical to ethylene response factor 1 GB:AAD03544 from [Arabidopsis thaliana] Length = 218 Score = 25.4 bits (53), Expect = 8.3 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = -3 Query: 226 DSKSLAYCSLALAAFSSQILLSFIDFHISPPFLAISVTFSPGCSDLI 86 + +LAY A + S +L+F + I T+ GCS ++ Sbjct: 116 EEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVV 162 >At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus] Length = 753 Score = 25.4 bits (53), Expect = 8.3 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +3 Query: 27 DKPKRPMSAYMLWLNSAREQIKSEH 101 DKP+ + Y+LW + + KS+H Sbjct: 283 DKPEEEPNVYLLWGDDSTSDQKSKH 307 >At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein contains zinc finger, C2H2 type, domain, PROSITE:PS00028 Length = 373 Score = 25.4 bits (53), Expect = 8.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -2 Query: 215 FSILFFSLGCFLFP 174 FS+ F LGCF FP Sbjct: 15 FSLCFLFLGCFFFP 28 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,254,336 Number of Sequences: 28952 Number of extensions: 106157 Number of successful extensions: 308 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 303 length of database: 12,070,560 effective HSP length: 71 effective length of database: 10,014,968 effective search space used: 340508912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -