Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B01
         (461 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7SDY3 Cluster: Pre-mRNA-splicing factor cwc-24; n=3; P...    33   3.0  
UniRef50_UPI0001555157 Cluster: PREDICTED: similar to CAMP respo...    32   5.3  
UniRef50_Q8A097 Cluster: Sensor protein; n=2; Bacteroides|Rep: S...    32   7.0  
UniRef50_A6GXI0 Cluster: Putative uncharacterized protein; n=1; ...    31   9.2  

>UniRef50_Q7SDY3 Cluster: Pre-mRNA-splicing factor cwc-24; n=3;
           Pezizomycotina|Rep: Pre-mRNA-splicing factor cwc-24 -
           Neurospora crassa
          Length = 405

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 262 DICHQDNTFGTRWFDCDNEEDQITIG 339
           D   QD T G+ WFD DNE++ +++G
Sbjct: 125 DATKQDATKGSNWFDEDNEKEDLSVG 150


>UniRef50_UPI0001555157 Cluster: PREDICTED: similar to CAMP
           responsive element binding protein 3-like 3; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to CAMP
           responsive element binding protein 3-like 3 -
           Ornithorhynchus anatinus
          Length = 497

 Score = 32.3 bits (70), Expect = 5.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 239 PFNVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHRSLSH 117
           P   S ++I  +E+K+ ++  GL LP T+P +  + R+L H
Sbjct: 197 PQPASPRLILTEEEKRLLEKEGLTLPETLPLTKMEERALKH 237


>UniRef50_Q8A097 Cluster: Sensor protein; n=2; Bacteroides|Rep:
           Sensor protein - Bacteroides thetaiotaomicron
          Length = 1450

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 256 TYDICHQDNTFGTRWFDCDNEE 321
           TY++ H DN F TR F CDNE+
Sbjct: 423 TYNLVHIDNGFETRAFLCDNEK 444


>UniRef50_A6GXI0 Cluster: Putative uncharacterized protein; n=1;
           Flavobacterium psychrophilum JIP02/86|Rep: Putative
           uncharacterized protein - Flavobacterium psychrophilum
           (strain JIP02/86 / ATCC 49511)
          Length = 236

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -1

Query: 284 VLSW*HMSYVTLT*KPFNVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYH 105
           +LSW  +   T+  +PF +   ++F  +K  Q+Q N L+  +T  ++ + H   S +LY 
Sbjct: 97  ILSWQEIDLNTI--EPFTL---VVFENQKLYQLQWNELEKEMTKLDTKKNHIWSSSTLYS 151

Query: 104 FRFRGAR 84
           F  R  R
Sbjct: 152 FAIREQR 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,406,379
Number of Sequences: 1657284
Number of extensions: 7365975
Number of successful extensions: 18273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18273
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)