Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B01
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 30 0.15
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 0.80
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 28 0.80
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 2.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.6
SPAC6B12.18 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 7.4
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 7.4
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 24 9.8
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 24 9.8
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 30.3 bits (65), Expect = 0.15
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 17 NRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTRI 130
N+ AEWH +T + RK DA+R + D N +R+
Sbjct: 248 NKRRIFAEWHNRRTQGLSFRKTDAQRASRVDVNKASRL 285
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.9 bits (59), Expect = 0.80
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 226 LTLKGFQVKVTYDICHQDNTFGTRWFDCDNEEDQITIGYRDAPFTGCIMRASSGFSFVTV 405
L L G QV + D + + F F CD + + + + ++ F CI+ AS +
Sbjct: 474 LGLSGNQVLLLADGTNNCSKFFV--FQCDEDNESLKLLASES-FESCILNASYCSEMLFF 530
Query: 406 RTSSGRWI 429
+TSSG+ I
Sbjct: 531 QTSSGKLI 538
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 0.80
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 17 NRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTRI 130
N+ AEWH + RK DA+R + D N +R+
Sbjct: 223 NKKRIFAEWHHRRQQGLTFRKTDAQRASRVDVNKASRL 260
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 179 NGLQLPITVPESSQKHRSLSHSLYHF 102
N L+LP VPE +H L S++HF
Sbjct: 518 NSLKLPTVVPELEARH--LPSSVFHF 541
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 5.6
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 317 SLSQSNQRVPNVLSW*HMSYVTLT*KPFNVSFQIIFY----QEKKKQIQDNGLQLPITVP 150
S SQSN R N + Y L K N SFQ + Y QE+K ++ + ++ TV
Sbjct: 407 SASQSNLRRSNTVRPTSFYYEKLHIKNDNPSFQALPYETTTQERKPVVKPDSIK---TVK 463
Query: 149 ESSQKHRSLSHSLYH 105
+K + L H
Sbjct: 464 PEKKKSKGFFKKLMH 478
>SPAC6B12.18 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 228 EFSNYFLSGEEETDSG*RSAATDHCSREFTK 136
E +Y++S +E+ A DHC+ EFTK
Sbjct: 30 EVDDYYISLKEQV-----RAMQDHCNEEFTK 55
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 408 SNGNEAESTGGSHDASGKRSVAITNSN 328
SN N AES G D SG+ T N
Sbjct: 496 SNSNSAESRNGETDDSGESETYFTLMN 522
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.6 bits (51), Expect = 7.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 233 NVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHR-SLSHSLYHFR-FRGARLSYD 72
N+ F + Y+E +++I L + V ES+++H+ S ++ LY + RG L D
Sbjct: 766 NIHFAMHAYEELEQKIDLQRLIEALDVAESTKRHKISATNYLYTIKVVRGEGLHPD 821
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 357 KRSVAITNSNLILFIVTVKPASAKCII 277
K+ IT S L +V KPA+ CI+
Sbjct: 488 KQFPKITQSELNAAVVVSKPAAGSCIV 514
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 191 QIQDNGLQLPITVPESSQKHRSLSHSLYHF 102
Q ++ G+ L +T +S L HSL HF
Sbjct: 32 QDEEGGIDLCLTCFQSGCGETGLKHSLVHF 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,867
Number of Sequences: 5004
Number of extensions: 32044
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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