Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B01
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   3.7  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   3.7  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 FTGCIMRASSGFSFVTVRTSSGRWIWSSLTAC 450
           F  C   +S G  +V   +  GR++W++L  C
Sbjct: 105 FDFCARTSSHGIPYVATSSFFGRYVWAALFMC 136


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 FTGCIMRASSGFSFVTVRTSSGRWIWSSLTAC 450
           F  C   +S G  +V   +  GR++W++L  C
Sbjct: 105 FDFCARTSSHGIPYVATSSFFGRYVWAALFMC 136


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 209 YQEKKKQIQDNGLQLPITVPESS 141
           YQE +KQ  D+ L++P  +PE++
Sbjct: 457 YQENQKQDPDDHLEIPTILPENA 479


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 209 YQEKKKQIQDNGLQLPITVPESS 141
           YQE +KQ  D+ L++P  +PE++
Sbjct: 478 YQENQKQDPDDHLEIPTILPENA 500


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 209 YQEKKKQIQDNGLQLPITVPESS 141
           YQE +KQ  D+ L++P  +PE++
Sbjct: 502 YQENQKQDPDDHLEIPTILPENA 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,015,457
Number of Sequences: 27780
Number of extensions: 185204
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)