Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B01
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   4.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 139 KSTDPCHTVCITFVFAARVSLTM 71
           K+ D    VC+TFVF A +   +
Sbjct: 302 KAIDIWTGVCLTFVFGALLEFAL 324


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 139 KSTDPCHTVCITFVFAARVSLTM 71
           K+ D    VC+TFVF A +   +
Sbjct: 302 KAIDIWTGVCLTFVFGALLEFAL 324


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 21  EAHGVRSGTYHRLT 62
           + HG R  T HRLT
Sbjct: 203 QIHGYRCRTMHRLT 216


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 21  EAHGVRSGTYHRLT 62
           + HG R  T HRLT
Sbjct: 203 QIHGYRCRTMHRLT 216


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 321 GSDYYWLSRRSFYRMHHASLQWIQLRYR 404
           GS + W   R  Y +H  +     L YR
Sbjct: 170 GSAWQWNEERKQYYLHQFATGQPDLNYR 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,751
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)