Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B01
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative / th...    31   0.29 
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    29   2.0  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    29   2.0  
At3g26855.1 68416.m03360 hypothetical protein                          27   6.2  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   6.2  
At2g36550.1 68415.m04483 expressed protein                             27   8.2  
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ...    27   8.2  

>At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|P18256
           Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA
           ligase) (ThrRS) {Bacillus subtilis}; contains Pfam
           profiles PF00587: tRNA synthetase class II core domain
           (G, H, P, S and T), PF03129: Anticodon binding domain
          Length = 650

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 242 KPFNVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHR-SLSHSLYH-FRFRG 90
           +P N  + I+ YQ K++  +D    LPI V E    +R  LS SL+  FR RG
Sbjct: 343 RPMNCPYHILLYQRKRQSYRD----LPIRVAELGTVYRYELSGSLHGLFRVRG 391


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHFRFRGARLS 78
           F +EKKK I++   +L   + E+ +++  ++H L    F+G R +
Sbjct: 217 FLKEKKK-IEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFN 260


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHFRFRGARLS 78
           F +EKKK I++   +L   + E+ +++  ++H L    F+G R +
Sbjct: 217 FLKEKKK-IEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFN 260


>At3g26855.1 68416.m03360 hypothetical protein
          Length = 163

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 160 SLFQRVHKSTDPCHTVCIT 104
           SLF R+H    PC+ +C++
Sbjct: 96  SLFPRIHDERTPCNPICLS 114


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 14  LNRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTR-ICAFVNSLEQ*SVAADRYPES 190
           L+  +R AE  +    +      ++  ++  DT    R I + + +L+Q SV  D YP+ 
Sbjct: 598 LSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKL 657

Query: 191 VSSSPDKK 214
           + S+ DK+
Sbjct: 658 LESAKDKR 665


>At2g36550.1 68415.m04483 expressed protein
          Length = 221

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 275 KIIHLALAGLTVTMKRIRXXXXXXXXXXPDASCEPPVDSASLPLE 409
           K++ L+L GL +    I+          PDASC P + + S+  E
Sbjct: 55  KLLVLSLNGLLLHRLHIKNKRNAPKNRSPDASCGPNLGNISIDQE 99


>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 565

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLS 120
           ++Q+ + Q    G QLP+ +P  SQ HR LS
Sbjct: 534 YFQQVRSQ---RGDQLPVFMPTDSQLHRHLS 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,310,478
Number of Sequences: 28952
Number of extensions: 167109
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)