Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A24
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 193 5e-50
03_01_0547 + 4093196-4093657,4094267-4095148 193 5e-50
03_01_0544 + 4082528-4082989,4083585-4084466 193 5e-50
03_01_0543 + 4076981-4077442,4078145-4079026 193 5e-50
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 53 1e-07
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 4e-07
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 51 4e-07
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 51 4e-07
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 0.81
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 1.4
10_08_1038 - 22485394-22485960,22486712-22487197 28 2.5
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 2.5
11_06_0596 + 25385744-25388890 28 3.3
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 3.3
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 4.3
11_04_0242 - 15273774-15274043,15274131-15274235 27 4.3
03_05_0896 - 28592658-28593331,28594069-28595455 27 4.3
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 27 5.7
11_03_0079 + 9669666-9669728,9670779-9672545 27 5.7
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 27 5.7
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 27 7.6
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 7.6
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 27 7.6
02_05_0254 - 27177167-27177393,27177476-27177725,27177818-271780... 27 7.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 193 bits (470), Expect = 5e-50
Identities = 87/133 (65%), Positives = 108/133 (81%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+G
Sbjct: 313 VASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K
Sbjct: 373 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAAK 445
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 193 bits (470), Expect = 5e-50
Identities = 87/133 (65%), Positives = 108/133 (81%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+G
Sbjct: 313 VASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K
Sbjct: 373 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAAK 445
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 193 bits (470), Expect = 5e-50
Identities = 87/133 (65%), Positives = 108/133 (81%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+G
Sbjct: 313 VASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K
Sbjct: 373 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAAK 445
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 193 bits (470), Expect = 5e-50
Identities = 87/133 (65%), Positives = 108/133 (81%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+G
Sbjct: 313 VASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K
Sbjct: 373 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAAK 445
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 52.8 bits (121), Expect = 1e-07
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Frame = +1
Query: 7 GVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDR 180
G S NP +F AQ+ +L + GY VL H+ C+ ++ E++D
Sbjct: 303 GFVLSSIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDM 362
Query: 181 RTGKSTEDNPKS-------IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 318
+ K + K +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 363 KKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.8 bits (116), Expect = 4e-07
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +1
Query: 139 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 318
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 319 DMRQTVAVGVIKAV 360
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 50.8 bits (116), Expect = 4e-07
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +1
Query: 64 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 243
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 244 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 351
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 50.8 bits (116), Expect = 4e-07
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +1
Query: 64 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 243
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 244 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 351
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 0.81
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 297 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 211
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 233 PPLSTWFPPSPCVW 274
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 60 SASHCAKS--PRSNIKRIHTCIGLPHSPHSL 146
S+S CA + P NI RIH IGL SP L
Sbjct: 96 SSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 233 ASPDLMDLGLSSVDLPVRRSTFSL 162
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 158 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSP 280
K+ K +N+ TTL L++ M P+S+W + +P
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSWGSTEAVLMTP 872
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 155 PKSKRKSTVVLVNQQRTTLNPLNLVMP 235
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 4.3
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 143 PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW---FPPSPCVWSPSRNSHPSVVSP 313
P L S R + + + +P + PP +W PPS +P R S PS S
Sbjct: 153 PIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPPRRS-PSPAS- 210
Query: 314 CVT*GRRSPS 343
+T RRSPS
Sbjct: 211 TLTPPRRSPS 220
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 154 QICRLCGLCGNPIQVCI 104
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 136 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 297
H+ + EIK+ +R G+ + ++++GD SKP E F P
Sbjct: 638 HVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQ-----TSKPESAEGLNPFAP 686
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 297 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 211
G E+L EG + GGN +DN G+ +N F
Sbjct: 362 GMEYLFEGCSSITEGGNSMDNSGMAEYNLF 391
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 55 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 177
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 160 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 258
IKE + R GKST D P +G I PS
Sbjct: 207 IKEAITTRGGKSTRDPPYPNPTGTNGIAREAPS 239
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 347 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTRLTMAASPDLMDLGLSS 198
TP L + A+R GN + + +R + + AA DL DLGL+S
Sbjct: 144 TPPGFSRLTAADAERAVSGNLCRCTGYRPILDACKSFAADVDLEDLGLNS 193
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 55 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 177
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 377 PASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 270
PA + A ITPT T ++S A P G S + ++
Sbjct: 43 PAPTQAAADITPTPTTSILSTKASTPAGSCSSRSTS 78
>02_05_0254 -
27177167-27177393,27177476-27177725,27177818-27178054,
27178138-27178296,27179454-27179527,27180929-27181172
Length = 396
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 290 NSWKDSTHRGLEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQA 141
N + RGL+GT A S L G S + + + F+ + N+ A
Sbjct: 133 NKTSNPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISA 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,472
Number of Sequences: 37544
Number of extensions: 347006
Number of successful extensions: 1222
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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