Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A24
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 216 5e-57
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 3e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.001
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.1
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38) 29 1.9
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 1.9
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 2.6
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 28 2.6
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 3.4
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 3.4
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 3.4
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 3.4
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 3.4
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 3.4
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 3.4
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3) 27 4.5
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 27 5.9
SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 27 5.9
SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053) 27 5.9
SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06) 27 5.9
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 7.8
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3) 27 7.8
SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36) 27 7.8
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 27 7.8
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 27 7.8
SB_20319| Best HMM Match : IncA (HMM E-Value=0.2) 27 7.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 216 bits (528), Expect = 5e-57
Identities = 97/133 (72%), Positives = 114/133 (85%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VAGD KNNPP+ FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+G
Sbjct: 184 VAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSG 243
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K EDNPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 244 KKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVDKT 303
Query: 370 EAGGGKVTKAAEK 408
EA GGK TKAA K
Sbjct: 304 EAAGGKTTKAATK 316
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 172 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 321
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 235 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 351
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 109 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 276
TPVL TAH+ K ++ + D P ++KS ++VN V S L E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 137 T*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPP 238
T PA P + RK+T Q RTT P PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 136 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKP 264
HIA K E+K D ++ K+ + PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 182 VLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 298
+ + +Q + P PP ++PP+P + P++ S+P
Sbjct: 163 LFILRQHPSYPPTQPFYPPTQPFYPPTPSSYPPTQPSYP 201
>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
Length = 597
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A+ GV + GR P G WR PG +WR
Sbjct: 19 YAKAVPSGVKLVGRNPRYGEWRHKRPGYEWR 49
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 246 VDNGGITRFNGFRVVLC*FTSTTVDFLFDFGKFAG 142
VDN G+ N F V++C T+D++FD + +G
Sbjct: 1700 VDNAGMYAENAFTVLVC--DRNTIDYIFDEVQLSG 1732
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 347 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 252
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP--LGRFAVRDMRQ 330
KST+DN S S A V SK + V S +E PP + R V ++Q
Sbjct: 57 KSTKDNGNSKGSSSRASERGVGSKQVSVSSLKEAPPRVVKRHTVSSLQQ 105
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 81 SPRSNIKRIHTCIGLPHSPHSLQICR 158
SP+ KR T GLP S HSL CR
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCR 562
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 146 QAMWAVWQSNTGVYPFDI*PG*FSTMTCAVKSA-APLGGLFFESPA 12
Q +AVW + G + + PG +ST + V+S+ A GG E+ A
Sbjct: 78 QLNFAVWCATAGCFTSTLPPGGYSTSSAPVRSSIAGAGGPAMEAQA 123
>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A++ GV + R+P G WR +PG +WR
Sbjct: 657 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 687
>SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3)
Length = 840
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A++ GV + R+P G WR +PG +WR
Sbjct: 659 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 689
>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
Length = 1344
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 363 VHSLYYTDG---DRLPHVTHGETTEGWEFLEGLHTQGLG 256
VH YT+G D++ VT GET W + G+ +G
Sbjct: 734 VHIWSYTNGIDMDQVGLVTSGETVHIWSYTNGIDKDQVG 772
>SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 585
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 405 FGSFGDFATTCFLEVHSLYYT 343
FG+ F TCF +VH YYT
Sbjct: 114 FGNNDFFNLTCFWDVHITYYT 134
>SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053)
Length = 314
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 325 SCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
S +A+ GV + R P G WR +PG +WR
Sbjct: 71 SIYAKAVPSGVKLVERNPRYGEWRHKKPGYEWR 103
>SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06)
Length = 361
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 3 TRRCRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQICR 158
T CR+ + P G+C S + A R + T +GL + + CR
Sbjct: 46 TCNCRQKDTCPLDGNCLQTSVIYQATVTRKDNNTSETYVGLTENSFKTRFCR 97
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 209 GLSSVDLPVRRSTFSL-ISANLQAMWAVWQS 120
G++++ LP ST + NLQ W +WQS
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A+ GV + R P G WR PG +WR
Sbjct: 551 YAKAEPSGVKLVERNPRYGEWRHKRPGYEWR 581
>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
Length = 231
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 241 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 330
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFFAVSVSYIRDILQ 32
>SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36)
Length = 738
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 233
+A+ GV I R P G WR +PG +WR
Sbjct: 447 YAKAVPSGVKIVERNPRYGEWRHKKPGYEWR 477
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 121 DCHTAHIACKFAE-IKEKVDRRTGKSTEDNPKSIKSGD 231
D T + A K + IKE+ ++ G S ED+ K SGD
Sbjct: 77 DARTLYFAMKNIDSIKEEYQKKYGCSLEDDVKEETSGD 114
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 75 HNDLRCEVCSSPGWVVFRISC 13
H ++C VC GW + R+ C
Sbjct: 172 HRRVKCSVCKKVGWSMDRLVC 192
>SB_20319| Best HMM Match : IncA (HMM E-Value=0.2)
Length = 566
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 48 CRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRE 170
C++ +A H SP + IH G H+ +I QRE
Sbjct: 345 CKIRAAEHLVASPSAPDGEIHIVEGTAHTYRLQKISAIQRE 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,192
Number of Sequences: 59808
Number of extensions: 371003
Number of successful extensions: 1375
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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