BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A24 (409 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 146 7e-36 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 69 1e-12 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 52 2e-07 At4g27900.2 68417.m04005 expressed protein 32 0.17 At4g27900.1 68417.m04004 expressed protein 32 0.17 At1g45160.1 68414.m05177 protein kinase family protein contains ... 31 0.39 At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 0.91 At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 28 2.1 At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 28 2.1 At5g11940.1 68418.m01396 subtilase family protein contains simil... 28 2.8 At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 3.7 At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 4.8 At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.4 At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase, ... 27 6.4 At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 26 8.5 At5g53770.1 68418.m06681 nucleotidyltransferase family protein c... 26 8.5 At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 26 8.5 At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 26 8.5 At2g41140.1 68415.m05081 calcium-dependent protein kinase, putat... 26 8.5 At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 26 8.5 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 196 bits (478), Expect = 5e-51 Identities = 88/133 (66%), Positives = 111/133 (83%) Frame = +1 Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189 VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372 Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369 K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432 Query: 370 EAGGGKVTKAAEK 408 + G KVTKAA K Sbjct: 433 DPTGAKVTKAAVK 445 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 5e-51 Identities = 88/133 (66%), Positives = 111/133 (83%) Frame = +1 Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189 VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372 Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369 K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432 Query: 370 EAGGGKVTKAAEK 408 + G KVTKAA K Sbjct: 433 DPTGAKVTKAAVK 445 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 5e-51 Identities = 88/133 (66%), Positives = 111/133 (83%) Frame = +1 Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189 VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372 Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369 K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432 Query: 370 EAGGGKVTKAAEK 408 + G KVTKAA K Sbjct: 433 DPTGAKVTKAAVK 445 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 5e-51 Identities = 88/133 (66%), Positives = 111/133 (83%) Frame = +1 Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189 VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372 Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369 K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432 Query: 370 EAGGGKVTKAAEK 408 + G KVTKAA K Sbjct: 433 DPTGAKVTKAAVK 445 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 146 bits (353), Expect = 7e-36 Identities = 64/104 (61%), Positives = 81/104 (77%) Frame = +1 Query: 76 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 255 +NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60 Query: 256 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 387 +KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V K+ G K Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 68.9 bits (161), Expect = 1e-12 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1 Query: 31 NPPRGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTED 204 NP +F AQ+ +L + GY +L H C+ E+K ++D +T K + Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKK 473 Query: 205 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 351 +K+G A + + + +C+E F +FP LGRF +R +T+AVG + Sbjct: 474 KVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 51.6 bits (118), Expect = 2e-07 Identities = 30/109 (27%), Positives = 52/109 (47%) Frame = +1 Query: 34 PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPK 213 P A V+VL I G H A A ++ +D +TG+ T+ +P+ Sbjct: 555 PVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPR 614 Query: 214 SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 360 + + +A++ + P+CVE+F E LGR +R +TVA+G + + Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663 >At4g27900.2 68417.m04005 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.17 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +1 Query: 208 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 300 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g27900.1 68417.m04004 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.17 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +1 Query: 208 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 300 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At1g45160.1 68414.m05177 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719 Length = 1067 Score = 30.7 bits (66), Expect = 0.39 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Frame = +1 Query: 106 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESF- 282 Y P CH AC E++ R S +D K IK + N SK + ++SF Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSFS 138 Query: 283 QEFPPLG 303 E P G Sbjct: 139 HELGPRG 145 >At1g28280.1 68414.m03471 VQ motif-containing protein contains PF05678: VQ motif Length = 247 Score = 29.5 bits (63), Expect = 0.91 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 209 LNPLNLVMPPLSTWFPP-SPCVWSPSRNSHPSVVSPCVT 322 +NPLN V P+++ F P P + SPS PS+V VT Sbjct: 140 INPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSPVT 178 >At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase domain-containing protein low similarity to SP|Q03468 Excision repair protein ERCC-6 (Cockayne syndrome protein CSB) {Homo sapiens}; contains PFam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 1090 Score = 28.3 bits (60), Expect = 2.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 357 SLYYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNGGI 229 +L YT ++ + + EG +L LHTQG GG D+ G+ Sbjct: 364 NLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGL 406 >At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase domain-containing protein low similarity to SP|Q61687 Transcriptional regulator ATRX {Mus musculus}; contains PFam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 816 Score = 28.3 bits (60), Expect = 2.1 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 154 QICRLCGLCGNPIQVCIRLIF 92 ++CR+CGL PI+ I ++F Sbjct: 197 EVCRVCGLIKKPIESMIEVVF 217 >At5g11940.1 68418.m01396 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa] Length = 762 Score = 27.9 bits (59), Expect = 2.8 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 351 YYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNG 235 Y + + LPH TH +T G F+ + G G + G Sbjct: 217 YMSARESLPHGTHVASTAGGSFVSNVSDNGFGVGTIRGG 255 >At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) identical to Homeobox protein LUMINIDEPENDENS (Swiss-Prot:Q38796) [Arabidopsis thaliana] Length = 953 Score = 27.5 bits (58), Expect = 3.7 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +1 Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 363 K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501 >At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV GI:9651815 from [Arabidopsis thaliana]; identical to cDNA DNA ligase IV, GI:9651814 Length = 1219 Score = 27.1 bits (57), Expect = 4.8 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Frame = +1 Query: 178 RRTGKSTEDNP---KSIKSGDAAIVNLVPSK 261 ++ +ST+DNP KS K G+ V+LVPS+ Sbjct: 610 QKESESTQDNPKVNKSSKRGEKKNVSLVPSQ 640 >At5g38560.1 68418.m04662 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 681 Score = 26.6 bits (56), Expect = 6.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 233 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT 322 PP+ + PP P V SP +S P P +T Sbjct: 49 PPVVSSSPPPPVVSSPPPSSSPPPSPPVIT 78 >At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative strong similarity to CTP:phosphorylcholine cytidylyltransferase [Arabidopsis thaliana] GI:21668498; contains Pfam profile PF01467: Cytidylyltransferase; identical to cDNA AtCCT2 for CTP:phosphorylcholine cytidylyltransferase GI:21668499 Length = 299 Score = 26.6 bits (56), Expect = 6.4 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 381 TTCFLEVHSLYYTDGDRLPHV-THGETTEGWEFLEGL 274 TT FL+ H + Y D LP+ T G + +EF++ + Sbjct: 98 TTEFLDKHKIDYVAHDALPYADTSGAGNDVYEFVKSI 134 >At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family protein Length = 1332 Score = 26.2 bits (55), Expect = 8.5 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 188 VNQQRTTLNPLNLVMPPLSTW 250 VN++ L NLV PPLS W Sbjct: 899 VNEEDKQLEDWNLVPPPLSLW 919 >At5g53770.1 68418.m06681 nucleotidyltransferase family protein contains Pfam domains PF03828: PAP/25A associated domain, PF01909: Nucleotidyltransferase domain Length = 530 Score = 26.2 bits (55), Expect = 8.5 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 148 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCV 273 KF E K + E+ PK+ + A+ L P +PLC+ Sbjct: 223 KFVEKKSNIAFDLSFDMENGPKAAEFIQDAVSKLPPLRPLCL 264 >At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1) nearly identical to P|P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} Length = 1840 Score = 26.2 bits (55), Expect = 8.5 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +2 Query: 134 PT*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSH 295 PT P+ P+S + S + + L+P + P + P SP +SP+ S+ Sbjct: 1722 PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPS-YSPTSPSY 1774 >At3g44350.1 68416.m04765 no apical meristem (NAM) family protein Tobacco elicitor-responsive gene (TERN), NAC-domain protein, Nicotiana tabacum, EMBL:AB021178 Length = 228 Score = 26.2 bits (55), Expect = 8.5 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 263 GLE-GTRLTMAASPDLMDLGLSSVDLPVRRSTFS 165 G+E +R T++ SP+ G + VDLPV +T + Sbjct: 172 GVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205 >At2g41140.1 68415.m05081 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] gi|16904226|gb|AAL30820 Length = 576 Score = 26.2 bits (55), Expect = 8.5 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 145 CKFAEIKEKVDRRTGKSTEDNPKSI 219 CK E+ +K+ +R GK +ED+ K + Sbjct: 207 CKGGELLDKILQRGGKYSEDDAKKV 231 >At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF02225: protease-associated (PA) domain and Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger); similar to ReMembR-H2 protein JR702 [Arabidopsis thaliana] gi|6942149|gb|AAF32326 Length = 422 Score = 26.2 bits (55), Expect = 8.5 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Frame = +1 Query: 115 VLDC-HTAHIACKFAEIKE-----KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 276 VL C H H+AC + + V +R ++T D P + +S ++ S +C++ Sbjct: 247 VLPCSHKFHVACVDSWLISWRTFCPVCKRDARTTADEPLATESTPFLSSSIATSSLVCID 306 Query: 277 SFQEFPPLG 303 S PPLG Sbjct: 307 S----PPLG 311 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.315 0.132 0.386 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,762,271 Number of Sequences: 28952 Number of extensions: 251475 Number of successful extensions: 845 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 842 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 605614832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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