Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A24
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 196 5e-51
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 146 7e-36
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 69 1e-12
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 52 2e-07
At4g27900.2 68417.m04005 expressed protein 32 0.17
At4g27900.1 68417.m04004 expressed protein 32 0.17
At1g45160.1 68414.m05177 protein kinase family protein contains ... 31 0.39
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 0.91
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 28 2.1
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 28 2.1
At5g11940.1 68418.m01396 subtilase family protein contains simil... 28 2.8
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 3.7
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 4.8
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.4
At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase, ... 27 6.4
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 26 8.5
At5g53770.1 68418.m06681 nucleotidyltransferase family protein c... 26 8.5
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 26 8.5
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 26 8.5
At2g41140.1 68415.m05081 calcium-dependent protein kinase, putat... 26 8.5
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 26 8.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 196 bits (478), Expect = 5e-51
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G
Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAVK 445
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 196 bits (478), Expect = 5e-51
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G
Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAVK 445
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 196 bits (478), Expect = 5e-51
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G
Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAVK 445
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 196 bits (478), Expect = 5e-51
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 10 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
VA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+G
Sbjct: 313 VASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSG 372
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFK 369
K E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K
Sbjct: 373 KEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
Query: 370 EAGGGKVTKAAEK 408
+ G KVTKAA K
Sbjct: 433 DPTGAKVTKAAVK 445
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 146 bits (353), Expect = 7e-36
Identities = 64/104 (61%), Positives = 81/104 (77%)
Frame = +1
Query: 76 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 255
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 256 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 387
+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V K+ G K
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 68.9 bits (161), Expect = 1e-12
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +1
Query: 31 NPPRGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTED 204
NP +F AQ+ +L + GY +L H C+ E+K ++D +T K +
Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKK 473
Query: 205 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 351
+K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 474 KVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 51.6 bits (118), Expect = 2e-07
Identities = 30/109 (27%), Positives = 52/109 (47%)
Frame = +1
Query: 34 PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPK 213
P A V+VL I G H A A ++ +D +TG+ T+ +P+
Sbjct: 555 PVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPR 614
Query: 214 SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 360
+ + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.17
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 208 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 300
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.17
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 208 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 300
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 106 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESF- 282
Y P CH AC E++ R S +D K IK + N SK + ++SF
Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSFS 138
Query: 283 QEFPPLG 303
E P G
Sbjct: 139 HELGPRG 145
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 29.5 bits (63), Expect = 0.91
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 209 LNPLNLVMPPLSTWFPP-SPCVWSPSRNSHPSVVSPCVT 322
+NPLN V P+++ F P P + SPS PS+V VT
Sbjct: 140 INPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSPVT 178
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 357 SLYYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNGGI 229
+L YT ++ + + EG +L LHTQG GG D+ G+
Sbjct: 364 NLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGL 406
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 154 QICRLCGLCGNPIQVCIRLIF 92
++CR+CGL PI+ I ++F
Sbjct: 197 EVCRVCGLIKKPIESMIEVVF 217
>At5g11940.1 68418.m01396 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 762
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 351 YYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNG 235
Y + + LPH TH +T G F+ + G G + G
Sbjct: 217 YMSARESLPHGTHVASTAGGSFVSNVSDNGFGVGTIRGG 255
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 363
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 178 RRTGKSTEDNP---KSIKSGDAAIVNLVPSK 261
++ +ST+DNP KS K G+ V+LVPS+
Sbjct: 610 QKESESTQDNPKVNKSSKRGEKKNVSLVPSQ 640
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 233 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT 322
PP+ + PP P V SP +S P P +T
Sbjct: 49 PPVVSSSPPPPVVSSPPPSSSPPPSPPVIT 78
>At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase,
putative / phosphorylcholine transferase, putative /
CTP:phosphocholine cytidylyltransferase, putative strong
similarity to CTP:phosphorylcholine cytidylyltransferase
[Arabidopsis thaliana] GI:21668498; contains Pfam
profile PF01467: Cytidylyltransferase; identical to cDNA
AtCCT2 for CTP:phosphorylcholine cytidylyltransferase
GI:21668499
Length = 299
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 381 TTCFLEVHSLYYTDGDRLPHV-THGETTEGWEFLEGL 274
TT FL+ H + Y D LP+ T G + +EF++ +
Sbjct: 98 TTEFLDKHKIDYVAHDALPYADTSGAGNDVYEFVKSI 134
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 188 VNQQRTTLNPLNLVMPPLSTW 250
VN++ L NLV PPLS W
Sbjct: 899 VNEEDKQLEDWNLVPPPLSLW 919
>At5g53770.1 68418.m06681 nucleotidyltransferase family protein
contains Pfam domains PF03828: PAP/25A associated
domain, PF01909: Nucleotidyltransferase domain
Length = 530
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 148 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCV 273
KF E K + E+ PK+ + A+ L P +PLC+
Sbjct: 223 KFVEKKSNIAFDLSFDMENGPKAAEFIQDAVSKLPPLRPLCL 264
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 134 PT*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSH 295
PT P+ P+S + S + + L+P + P + P SP +SP+ S+
Sbjct: 1722 PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPS-YSPTSPSY 1774
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 263 GLE-GTRLTMAASPDLMDLGLSSVDLPVRRSTFS 165
G+E +R T++ SP+ G + VDLPV +T +
Sbjct: 172 GVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205
>At2g41140.1 68415.m05081 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820
Length = 576
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 145 CKFAEIKEKVDRRTGKSTEDNPKSI 219
CK E+ +K+ +R GK +ED+ K +
Sbjct: 207 CKGGELLDKILQRGGKYSEDDAKKV 231
>At1g22670.1 68414.m02833 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 422
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 115 VLDC-HTAHIACKFAEIKE-----KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 276
VL C H H+AC + + V +R ++T D P + +S ++ S +C++
Sbjct: 247 VLPCSHKFHVACVDSWLISWRTFCPVCKRDARTTADEPLATESTPFLSSSIATSSLVCID 306
Query: 277 SFQEFPPLG 303
S PPLG
Sbjct: 307 S----PPLG 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,271
Number of Sequences: 28952
Number of extensions: 251475
Number of successful extensions: 845
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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