Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A23
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    99   9e-23
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   100   1e-22
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   1.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   1.8  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   2.3  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   3.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   3.1  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    23   9.4  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    23   9.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   9.4  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    23   9.4  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =   99 bits (238), Expect = 9e-23
 Identities = 47/104 (45%), Positives = 59/104 (56%)
 Frame = +3

Query: 12  TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR +H
Sbjct: 3   THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKS 323
           + +N  + P +NLD+LWTLV  + R  Y        PVIN+++S
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQS 106


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 99.5 bits (237), Expect = 1e-22
 Identities = 47/104 (45%), Positives = 60/104 (57%)
 Frame = +3

Query: 12  TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR +H
Sbjct: 3   THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKS 323
           + +N  + P +NLD+LWTL+  +AR  Y        PVIN+++S
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQS 106


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect(2) = 1.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 117 HHQHYHVHQD 88
           HH H+H H D
Sbjct: 305 HHHHHHSHDD 314



 Score = 22.2 bits (45), Expect(2) = 1.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 126 DGAHHQHYHVH 94
           +G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVIN 311
           M NY  +R  D   ++NL K W  +   AR+         V VI+
Sbjct: 37  MENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVIS 81


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVIN 311
           M NY  +R  D   +LNL K W  +   AR+         V V++
Sbjct: 36  MDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVS 80


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKSWLLQ 335
           + NY ++    FCP L  D    +    +   Y  A   K+ V+ +   WL Q
Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCV--EWLWQ 170


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 282 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 109
           ++H +     RP+  V    +  +GR+      G  +    +  QGG       +G HH 
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744

Query: 108 HYHVH 94
           H+H H
Sbjct: 745 HHHHH 749


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 GKLGMRNYHMRRNKD 209
           GK+  RNY +R N+D
Sbjct: 196 GKIWFRNYEIRENED 210


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 302 RHLAICGRCIR*SCLLRDQSPQ 237
           RH  +CGR I   C+L    PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 150 HPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 239
           HP YF  L    +     +D C +L+  K+
Sbjct: 741 HPPYFDDLATTTFSSLLKRDECTILSFFKI 770


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 225 LKQGR-NPCFFSCGNFSY 175
           LK GR +P FF+ GNF++
Sbjct: 24  LKSGRKSPYFFNSGNFTH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,859
Number of Sequences: 5004
Number of extensions: 23220
Number of successful extensions: 62
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)