BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A23 (335 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 99 9e-23 SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 100 1e-22 SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 23 1.2 SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 26 1.8 SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 25 2.3 SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 3.1 SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 3.1 SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 23 9.4 SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 23 9.4 SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 23 9.4 SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 23 9.4 >SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schizosaccharomyces pombe|chr 2|||Manual Length = 148 Score = 99 bits (238), Expect = 9e-23 Identities = 47/104 (45%), Positives = 59/104 (56%) Frame = +3 Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191 T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR +H Sbjct: 3 THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62 Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKS 323 + +N + P +NLD+LWTLV + R Y PVIN+++S Sbjct: 63 LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQS 106 >SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual Length = 148 Score = 99.5 bits (237), Expect = 1e-22 Identities = 47/104 (45%), Positives = 60/104 (57%) Frame = +3 Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191 T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR +H Sbjct: 3 THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62 Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKS 323 + +N + P +NLD+LWTL+ +AR Y PVIN+++S Sbjct: 63 LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQS 106 >SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pombe|chr 2|||Manual Length = 420 Score = 22.6 bits (46), Expect(2) = 1.2 Identities = 6/10 (60%), Positives = 7/10 (70%) Frame = -3 Query: 117 HHQHYHVHQD 88 HH H+H H D Sbjct: 305 HHHHHHSHDD 314 Score = 22.2 bits (45), Expect(2) = 1.2 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = -3 Query: 126 DGAHHQHYHVH 94 +G HH H+H H Sbjct: 297 EGHHHHHHHHH 307 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 25.8 bits (54), Expect = 1.8 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +3 Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVIN 311 M NY +R D ++NL K W + AR+ V VI+ Sbjct: 37 MENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVIS 81 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 25.4 bits (53), Expect = 2.3 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +3 Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVIN 311 M NY +R D +LNL K W + AR+ V V++ Sbjct: 36 MDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVS 80 >SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosaccharomyces pombe|chr 1|||Manual Length = 648 Score = 25.0 bits (52), Expect = 3.1 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = +3 Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVKSWLLQ 335 + NY ++ FCP L D + + Y A K+ V+ + WL Q Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCV--EWLWQ 170 >SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 794 Score = 25.0 bits (52), Expect = 3.1 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = -3 Query: 282 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 109 ++H + RP+ V + +GR+ G + + QGG +G HH Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744 Query: 108 HYHVH 94 H+H H Sbjct: 745 HHHHH 749 >SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 23.4 bits (48), Expect = 9.4 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 Query: 165 GKLGMRNYHMRRNKD 209 GK+ RNY +R N+D Sbjct: 196 GKIWFRNYEIRENED 210 >SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 23.4 bits (48), Expect = 9.4 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 Query: 302 RHLAICGRCIR*SCLLRDQSPQ 237 RH +CGR I C+L PQ Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316 >SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1233 Score = 23.4 bits (48), Expect = 9.4 Identities = 9/30 (30%), Positives = 14/30 (46%) Frame = +3 Query: 150 HPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 239 HP YF L + +D C +L+ K+ Sbjct: 741 HPPYFDDLATTTFSSLLKRDECTILSFFKI 770 >SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 215 Score = 23.4 bits (48), Expect = 9.4 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%) Frame = -3 Query: 225 LKQGR-NPCFFSCGNFSY 175 LK GR +P FF+ GNF++ Sbjct: 24 LKSGRKSPYFFNSGNFTH 41 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,246,859 Number of Sequences: 5004 Number of extensions: 23220 Number of successful extensions: 62 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 60 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 95984434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -