Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A23
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 100 3e-22
03_04_0027 + 16593133-16593573 98 1e-21
02_01_0563 + 4134954-4135388 98 1e-21
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 31 0.23
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 26 0.25
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 23 0.93
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 29 1.2
12_01_0981 + 9931542-9931606,9931779-9933105 27 2.9
07_03_1617 - 28169177-28169400,28169508-28169763,28170308-281705... 27 2.9
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 5.0
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 5.0
07_03_1629 - 28246440-28247339 23 7.8
12_01_0407 - 3219980-3221278 26 8.7
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 26 8.7
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 26 8.7
04_04_1553 - 34363848-34366058,34369087-34370451 26 8.7
04_04_1550 - 34332948-34335986 26 8.7
03_02_0341 - 7643426-7643973,7644340-7644505 26 8.7
>07_03_1250 - 25183375-25183815
Length = 146
Score = 100 bits (239), Expect = 3e-22
Identities = 46/103 (44%), Positives = 62/103 (60%)
Frame = +3
Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR +H
Sbjct: 3 TSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
RNK + P +N+++LW++V + A A GK P++++ +
Sbjct: 63 RLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQ 103
>03_04_0027 + 16593133-16593573
Length = 146
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/103 (45%), Positives = 59/103 (57%)
Frame = +3
Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR +H
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
N+ CP +N+++LW++V A A GK PVI++ +
Sbjct: 63 KLSNRFHCPAVNVERLWSMVPTDKA---AEAGAGKAPVIDVTQ 102
>02_01_0563 + 4134954-4135388
Length = 144
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/103 (45%), Positives = 60/103 (58%)
Frame = +3
Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR +H
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
N+ CP +N+++LW++V + A A GK PVI++ +
Sbjct: 63 RLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQ 100
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 31.1 bits (67), Expect = 0.23
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 123 GAHHQHYHVHQDAYGACRYDHDH 55
G HH+H+H H+ +G DH H
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDHHH 555
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 25.8 bits (54), Expect(2) = 0.25
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 126 DGAHHQHYHVHQ 91
D HH H+HVHQ
Sbjct: 42 DVGHHHHHHVHQ 53
Score = 23.8 bits (49), Expect(2) = 0.25
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 117 HHQHYHVHQDAYG 79
HH H H HQ +G
Sbjct: 47 HHHHVHQHQQQHG 59
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 23.4 bits (48), Expect(3) = 0.93
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 117 HHQHYHVHQDA 85
HH H+H H+D+
Sbjct: 356 HHHHHHGHEDS 366
Score = 21.4 bits (43), Expect(3) = 0.93
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 123 GAHHQHYHVH 94
G HH H+H H
Sbjct: 352 GHHHHHHHHH 361
Score = 21.0 bits (42), Expect(3) = 0.93
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 108 HYHVHQDAYGA 76
HY VH+ YGA
Sbjct: 377 HYPVHEPRYGA 387
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 210 NPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQHYHVHQDAYGACRY 67
+P + N QV T + P C G HH H+H G+C +
Sbjct: 140 SPLYLGGTNTVLQVQDMTMMSSTPA--CYGEHHHHHHHQLTKEGSCNH 185
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 120 HHHRINMDKYHPGYFGKLGMRNYHMR-RNKDFCPVLNLDKL--WTLVSEQARLTYASATD 290
HHH+ N + +HP Y + + R RN DF P D L W +E+ Y + +
Sbjct: 161 HHHQYNPEPHHPHYEHRPHYADPAKRSRNVDF-PTFEGDYLESWIRKAEKYFSLYQTPEE 219
Query: 291 GKV 299
KV
Sbjct: 220 DKV 222
>07_03_1617 -
28169177-28169400,28169508-28169763,28170308-28170556,
28170680-28170810,28170902-28171157
Length = 371
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 114 GEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTL 248
G+ + D YHP L M Y + + + +NL KL++L
Sbjct: 327 GDRKSHVFWDPYHPSEAANLVMAKYIVDGDSKYISPMNLRKLFSL 371
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 126 DGAHHQHYHVHQDAYG 79
D HH H+H H DA G
Sbjct: 48 DHQHHHHHHHHHDAAG 63
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 111 GGEHHHRINMDKYH 152
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>07_03_1629 - 28246440-28247339
Length = 299
Score = 23.0 bits (47), Expect(2) = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 117 HHQHYHVHQDAYGA 76
HH H+H H A GA
Sbjct: 145 HHHHHHGHGAASGA 158
Score = 21.4 bits (43), Expect(2) = 7.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 123 GAHHQHYHVH 94
G HH H+H H
Sbjct: 141 GHHHHHHHHH 150
>12_01_0407 - 3219980-3221278
Length = 432
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYDHDHG 52
HH H+H Q A D +HG
Sbjct: 64 HHHHHHHRQHAKNGMSDDEEHG 85
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 132 FCDGAHHQHYHVHQDAYG 79
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -3
Query: 132 FCDGAHHQHYHVHQDAYGACRYDHDHGSRV 43
F AH H+H H + + H HG V
Sbjct: 65 FAPRAHGDHHHGHHHHHHGHGHSHHHGPEV 94
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 131 NQHGQVPPWV--LWQTWYEKLPHEKKQGFLP 217
N HG++PPW+ L +Y L + G LP
Sbjct: 918 NLHGEIPPWLGNLDSLFYIDLSNNSFSGELP 948
>04_04_1550 - 34332948-34335986
Length = 1012
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 131 NQHGQVPPWV--LWQTWYEKLPHEKKQGFLP 217
N HG++PPW+ L +Y L + G LP
Sbjct: 450 NLHGEIPPWLGNLDSLFYIDLSNNSFSGELP 480
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 129 CDGAHHQHYH--VHQDAYGACRYDHDH 55
CD H H+H +H ++DHDH
Sbjct: 157 CDPFHKHHHHIVLHPPVIVPPKHDHDH 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,509,988
Number of Sequences: 37544
Number of extensions: 169971
Number of successful extensions: 574
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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