Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A23
(335 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10) 82 9e-17
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 29 1.2
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_22292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11) 27 3.8
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 3.8
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 27 5.0
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 27 5.0
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1) 26 8.7
>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
Length = 173
Score = 82.2 bits (194), Expect = 9e-17
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +3
Query: 129 RINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVI 308
R + + HPGYFGK+GMR++H+ RN P +NLDK+W+LVSEQ R Y + DG VPVI
Sbjct: 67 RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126
Query: 309 NIVKS 323
++VK+
Sbjct: 127 DVVKA 131
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 150 GTCPC*FCDGAHH--QHYHVHQDAYGACRYD 64
G CP CDG+ H H+ HQ + G R D
Sbjct: 939 GVCPTPGCDGSGHVSGHWRTHQSSAGCPRND 969
>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYD 64
HHQH+H+ D+ C+ D
Sbjct: 132 HHQHHHIKTDSQERCQID 149
>SB_22292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 314 NVDYRHLAICGRCIR*SCLLRDQSPQFVKI*NRAEILVS 198
N D+R L CG C R C +R Q K+ + L+S
Sbjct: 235 NEDFRMLNTCGPCKRIHCYVRKQVKSKKKVDSAVRCLLS 273
>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
Length = 268
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 141 DKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 239
D Y Y GK G+ N RN D V +LD++
Sbjct: 170 DAYLRSYLGKHGVANIRNLRNDDVIIVCDLDEI 202
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYDHDH 55
HHQH+H H + + H+H
Sbjct: 213 HHQHHHHHHHQHNHHHHHHNH 233
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 2 HEGHLQEEDQEVERTREPWSWSYR 73
HEG L+EE E ERT E S R
Sbjct: 422 HEGRLEEERPEEERTHEERSHKER 445
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 128 QNQHGQVPPWVLWQTW--YEKLPHE 196
+N +G +PP W+ W YE P+E
Sbjct: 97 RNSYGSLPPRARWRRWGEYETQPNE 121
>SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYDHDH 55
+H H+H HQ Y +H+H
Sbjct: 30 YHHHHHYHQQQYRKHHNNHNH 50
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 162 STQGGTCPC*F-CDGAHHQHYHVHQDAYGACRYDHDHG 52
S GG C CDG H H H H G Y D+G
Sbjct: 108 SNSGGDVDCDDDCDGRSHSHRHAHGGGPG---YGGDYG 142
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 132 FCDGAHHQHYHVHQD 88
+C HH H+H HQD
Sbjct: 1254 WCHHHHHHHHHHHQD 1268
>SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1)
Length = 416
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 282 QMHTLVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQ---VCQSTQGGT 145
Q TL+ T+ +L++G +P C NFS+ +C S+ GT
Sbjct: 277 QKGTLIRVFDTQGRTLVVELRRGADPATLYCINFSHDSAFLCVSSDKGT 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,720,415
Number of Sequences: 59808
Number of extensions: 200760
Number of successful extensions: 813
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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