Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A23
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   116   4e-27
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    49   1e-06
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   0.83 
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    23   5.2  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    23   5.2  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate s...    26   5.8  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    26   5.8  
AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical...    26   5.8  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  116 bits (279), Expect = 4e-27
 Identities = 52/104 (50%), Positives = 69/104 (66%)
 Frame = +3

Query: 9   ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNY 188
           A + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR +
Sbjct: 2   AHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVF 61

Query: 189 HMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
           H+ +N+ +CP +N+++LW+LV ++ R     AT GK PVI+  K
Sbjct: 62  HLNKNQHYCPTVNVERLWSLVPQEVR---DKATGGKSPVIDCTK 102


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 177 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
           MR +H+ +N+ +CP +N+++LW+LV ++ R     AT GK PVI+  K
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVR---DKATGGKSPVIDCTK 45


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -3

Query: 270 LVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCD 124
           L  P   P S VC+      +PC+++  N+ Y    +    T     C+
Sbjct: 130 LSAPCTEPRSYVCETPSTHEDPCYYNYNNYCYTFSHNQSSFTTAQAICE 178


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 319 LTMLITGTLPSVADAYVSLACSETRVHS-LSRF-KTGQKSLFL--LMW*FLIP-SLPKYP 155
           +T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K+ 
Sbjct: 104 ITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEKFE 163

Query: 154 G 152
           G
Sbjct: 164 G 164


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 319 LTMLITGTLPSVADAYVSLACSETRVHS-LSRF-KTGQKSLFL--LMW*FLIP-SLPKYP 155
           +T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K+ 
Sbjct: 104 ITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEKFE 163

Query: 154 G 152
           G
Sbjct: 164 G 164


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 141 DKYHPGYFGKLGMRNYHMRRN 203
           D YH  YFGK G   YH+ RN
Sbjct: 405 DNYHNRYFGKAG---YHLTRN 422


>AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical
           protein Y67A10A.11 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 192 CGNFSY-QVCQSTQGGTCPC 136
           C   +Y + C STQ G CPC
Sbjct: 45  CSQINYSRTCLSTQMGNCPC 64


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 204  CFFSCGNFSYQVCQSTQGGTCP 139
            C FS  N  Y  C + QG  CP
Sbjct: 946  CRFSQSNHKYYCCGNIQGSMCP 967


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 132 FCDGAHHQHYHVH 94
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 5.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 117 HHQHYHVHQD 88
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 132 FCDGAHHQHYHVH 94
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 5.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 117 HHQHYHVHQD 88
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 243 STVCQDLKQGRNPCFFSCGNFSYQVCQS 160
           S VCQ  +   + C  SC     +VCQS
Sbjct: 106 SNVCQQKQYSSSQCASSCNRSCSRVCQS 133


>AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate
           synthase protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 141 DKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKL-WTLVSEQARLTYASATDGKVPVINIV 317
           D+   G     GM++ +  RN    P+L   ++ W  V E+     + +TDGK+ +   V
Sbjct: 50  DRTGTGTISIFGMQSKYCLRNGTI-PLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNV 108

Query: 318 KSW 326
           K W
Sbjct: 109 KIW 111


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 313 MLITGTLPSVADAYVSLACSETRVHSLSRFKTGQKS 206
           +LIT +L S+A +Y+ L  + +R  S +RFK  +KS
Sbjct: 113 ILITCSLLSLALSYIYLFENRSRSVSQNRFKMSKKS 148


>AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.4 protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 141 DKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKL-WTLVSEQARLTYASATDGKVPVINIV 317
           D+   G     GM++ +  RN    P+L   ++ W  V E+     + +TDGK+ +   V
Sbjct: 47  DRTGTGTISIFGMQSKYCLRNGTI-PLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNV 105

Query: 318 KSW 326
           K W
Sbjct: 106 KIW 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,990
Number of Sequences: 27780
Number of extensions: 144294
Number of successful extensions: 556
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)