Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A23
(335 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si... 113 3e-26
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id... 112 6e-26
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si... 45 1e-05
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 29 0.77
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 0.77
At5g38920.1 68418.m04707 hypothetical protein 28 1.3
At2g16100.1 68415.m01846 hypothetical protein 28 1.8
At1g21200.1 68414.m02650 expressed protein 27 2.4
At3g55760.2 68416.m06196 expressed protein 27 3.1
At3g55760.1 68416.m06195 expressed protein 27 3.1
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z... 27 4.1
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 26 5.4
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 26 5.4
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 26 5.4
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 26 7.2
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 26 7.2
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d... 25 9.5
At3g05150.1 68416.m00559 sugar transporter family protein simila... 25 9.5
At2g34320.1 68415.m04201 hypothetical protein 25 9.5
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 25 9.5
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 25 9.5
At1g32030.1 68414.m03940 expressed protein contains Pfam profile... 25 9.5
>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
GI:1710530 from [Arabidopsis thaliana]
Length = 146
Score = 113 bits (272), Expect = 3e-26
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +3
Query: 9 ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNY 188
AT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR +
Sbjct: 2 ATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
Query: 189 HMRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
H RNK FCP++NLDKLW+LV E + A ++ VP+I++ +
Sbjct: 62 HKLRNKFFCPIVNLDKLWSLVPEDVK---AKSSKDNVPLIDVTQ 102
>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
identical to 60S ribosomal protein L27A GB:P49637
[Arabidopsis thaliana]
Length = 146
Score = 112 bits (269), Expect = 6e-26
Identities = 53/103 (51%), Positives = 64/103 (62%)
Frame = +3
Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNYH 191
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR +H
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 192 MRRNKDFCPVLNLDKLWTLVSEQARLTYASATDGKVPVINIVK 320
RNK FCP++NLDKLW+LV E + A +T VP+I++ +
Sbjct: 63 KLRNKFFCPIVNLDKLWSLVPEDVK---AKSTKDNVPLIDVTQ 102
>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
similar to GB:BAA96068 from [Panax ginseng]
Length = 104
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 12 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGMRN 185
TS+KKTR LR HVS H R + PG G +GMR
Sbjct: 3 TSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGMRY 41
Query: 186 YHMRRNKDFCPVLNLDKLWTLV 251
+H RNK +C ++NLDKLW++V
Sbjct: 42 FHKLRNKFYCQIVNLDKLWSMV 63
>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 194
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 322 LLTMLITGTLPSVADAYVSLACSETRVHSL 233
LL++ T +LPS ++YV ACS TR L
Sbjct: 17 LLSLNPTSSLPSKRESYVQNACSVTRYQDL 46
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 29.1 bits (62), Expect = 0.77
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYDHDH 55
H H+H H + C ++HDH
Sbjct: 597 HDHHHHSHSHKHEECNHNHDH 617
>At5g38920.1 68418.m04707 hypothetical protein
Length = 192
Score = 28.3 bits (60), Expect = 1.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 122 PSQNQHGQVPPWVLWQTW 175
P G V PW+LW+ W
Sbjct: 12 PQLGDDGMVAPWILWRLW 29
>At2g16100.1 68415.m01846 hypothetical protein
Length = 250
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 119 APSQNQHGQVPPWVLWQTW 175
+P +Q Q+P W+LW+ W
Sbjct: 20 SPRTSQFHQLPLWILWRIW 38
>At1g21200.1 68414.m02650 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 126 DGAHHQHYHVHQDAYGACRYDHDHG 52
DG H Y AYG CR +H G
Sbjct: 289 DGDEHDEYEEQHYAYGDCRVNHYGG 313
>At3g55760.2 68416.m06196 expressed protein
Length = 578
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 167 QTWYEKLPHEKKQGFLPCF 223
+TWYEK PH GF CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562
>At3g55760.1 68416.m06195 expressed protein
Length = 578
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 167 QTWYEKLPHEKKQGFLPCF 223
+TWYEK PH GF CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562
>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 309
Score = 26.6 bits (56), Expect = 4.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 120 AHHQHYHVHQDAYG 79
+HH+H+H H + YG
Sbjct: 136 SHHRHHHYHHNQYG 149
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 5 EGHLQEEDQEVERTREPWS 61
E H + ED+EV++TR P S
Sbjct: 133 EKHYESEDEEVDQTRSPRS 151
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 5 EGHLQEEDQEVERTREPWS 61
E H + ED+EV++TR P S
Sbjct: 133 EKHYESEDEEVDQTRSPRS 151
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 192 CGNFSYQVCQSTQGGTCPC*FCDGAHHQHY 103
C ++Y++ +ST+ C C+G +H+ Y
Sbjct: 216 CELYAYEIWKSTRQIHFHCILCNGENHEEY 245
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 123 GAHHQHYHVHQDAYGACRYDHDHGSRV 43
G H H H H +G ++H HG V
Sbjct: 181 GHDHGHSHGHGHGHGHDHHNHSHGVTV 207
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 123 GAHHQHYHVHQDAYGACRYDHDHGSRV 43
G H H H H +G ++H HG V
Sbjct: 181 GHDHGHSHGHGHGHGHDHHNHSHGVTV 207
>At4g29090.1 68417.m04163 reverse transcriptase, putative /
RNA-dependent DNA polymerase, putative similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278;
contains Pfam profile PF00075: RNase H
Length = 575
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 122 PSQNQHGQVPPWVLWQTW 175
P + Q+ PW+LW+ W
Sbjct: 351 PQWEKASQLVPWLLWRLW 368
>At3g05150.1 68416.m00559 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 240 WTLVSEQARLTYASATDGKVPVINIVKSWLL 332
W ++SE + G V V+N + SWL+
Sbjct: 390 WVIMSEIFPINLKGTAGGLVTVVNWLSSWLV 420
>At2g34320.1 68415.m04201 hypothetical protein
Length = 292
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 122 PSQNQHGQVPPWVLWQTW 175
P + G + PW+LW+ W
Sbjct: 68 PKLGKIGNLVPWLLWRLW 85
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +2
Query: 146 VPPWVLWQTWYEK----LPHEKKQGFL 214
VPP W++W+EK L H K+G +
Sbjct: 1741 VPPEKSWESWWEKEIGHLRHSGKRGII 1767
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 117 HHQHYHVHQDAYGACRYDHDH 55
+H H H H D + + HDH
Sbjct: 323 NHDHDHHHHDGHDHHHHSHDH 343
>At1g32030.1 68414.m03940 expressed protein contains Pfam profile
PF03754: Domain of unknown function (DUF313); expression
supported by MPSS
Length = 333
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 17 QEEDQEVERTREPWSWSYRQAP 82
+ D E ++ + P+SW R+AP
Sbjct: 166 KHSDSEPKKAKTPYSWKGREAP 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,735,467
Number of Sequences: 28952
Number of extensions: 133065
Number of successful extensions: 447
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -