Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A22
(414 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.78
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.78
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 2.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 3.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 3.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 7.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 20 9.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 425 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 456
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 524
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.78
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAP 138
WK ++ L +VFT L T + CRAP
Sbjct: 493 WKFAAMVVDRLCLIVFTLFTVLATIVILCRAP 524
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 2.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
WK +L +F +FT C L T + +AP L
Sbjct: 539 WKYVAMVLDRIFLWIFTVACVLGTVLIILQAPSL 572
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 28 RLRVAWKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
R++ WK +L LF +FT + T+ + +AP L
Sbjct: 501 RVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIILQAPTL 539
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
WK +L LF VFT C T + +AP L
Sbjct: 474 WKFVAMVLDRLFLWVFTLACTAGTLGIIFQAPSL 507
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 7.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 28 RLRVAWKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
+++ WK +L LF +FT + T+ + +AP L
Sbjct: 506 KVKEDWKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTL 544
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 7.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 28 RLRVAWKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
+++ WK +L LF +FT + T+ + +AP L
Sbjct: 506 KVKEDWKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTL 544
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.2 bits (40), Expect = 9.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 43 WKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVL 144
W +L LF +FT + T + C AP L
Sbjct: 478 WGFVAMVLDRLFLWIFTIASIVGTFIILCEAPAL 511
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,989
Number of Sequences: 438
Number of extensions: 1828
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -