Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A22
(414 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 56 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 53 9e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 53 9e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 53 9e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 53 9e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 1e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 51 4e-07
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 51 4e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 5e-07
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 50 5e-07
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 50 5e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 50 6e-07
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 6e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 50 8e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 8e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 8e-07
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 50 8e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 49 1e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 3e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 3e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 48 3e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 48 3e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 48 3e-06
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 6e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 6e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 47 6e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 47 6e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 6e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 8e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 8e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 46 1e-05
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 46 1e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 46 1e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 46 1e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 45 2e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 45 2e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 45 2e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 44 3e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 4e-05
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 44 4e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 44 4e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 44 4e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 44 5e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 5e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 5e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 7e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 43 7e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 43 7e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 43 7e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 43 7e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 43 7e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 9e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 43 9e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 9e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 43 9e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 9e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 9e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 43 9e-05
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 43 9e-05
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 43 9e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 42 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 2e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 3e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 41 3e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 41 3e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 41 4e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 41 4e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 41 4e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 40 5e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 40 5e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 40 5e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 40 7e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 40 7e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 9e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 40 9e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 39 0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 39 0.001
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 39 0.002
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 39 0.002
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 38 0.002
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.003
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.005
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 37 0.005
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 37 0.006
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 37 0.006
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 37 0.006
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.006
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.008
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.008
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.008
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.008
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.008
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.008
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.011
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.011
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.011
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.011
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 36 0.014
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.014
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.019
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.019
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.019
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.019
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 35 0.019
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 35 0.025
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.025
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.025
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.033
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 34 0.044
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.044
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 33 0.058
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.058
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.058
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.058
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.058
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.076
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.076
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.076
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.076
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.076
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.076
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 33 0.10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 33 0.10
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 32 0.13
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 32 0.18
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 31 0.23
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.23
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 31 0.31
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.31
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.54
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 30 0.54
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 0.54
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 0.54
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 30 0.71
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 0.71
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 29 0.94
At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 0.94
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 29 0.94
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 29 0.94
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 1.2
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 29 1.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 1.6
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 28 2.2
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 28 2.2
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 28 2.2
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 28 2.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 2.9
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 2.9
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 2.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 3.8
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 27 3.8
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 3.8
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 3.8
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 27 5.0
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 5.0
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 6.6
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 6.6
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 6.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 6.6
At4g27630.2 68417.m03972 expressed protein 26 8.7
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 26 8.7
At1g64990.1 68414.m07366 expressed protein contains similarity t... 26 8.7
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 55.6 bits (128), Expect = 1e-08
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 296
G +FV NL + T+A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 297 QNLNGELVHGQGI---KIEAAKSRKAPSTPTTKIFVGNL 404
Q LN +V + I K R P T +++ NL
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNL 208
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
I+V N++ T+ +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 309 GELVHGQGIKIEAAKSRK 362
G++ HG+ + + A+ ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
+++ NL ++ LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 309 G 311
G
Sbjct: 263 G 263
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.8 bits (121), Expect = 9e-08
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 300 NLNGELVHGQGIKIEAAKSR 359
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.8 bits (121), Expect = 9e-08
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 300 NLNGELVHGQGIKIEAAKSR 359
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.8 bits (121), Expect = 9e-08
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 300 NLNGELVHGQGIKIEAAKSR 359
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 52.8 bits (121), Expect = 9e-08
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 302
++FV LS TTD LR LF +G + E ++R+ +GF+ ++E R+A+++
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 303 LNGELVHGQGIKIEAAKS 356
L+G++V G+ I +E AK+
Sbjct: 68 LDGKIVDGRLIFVEVAKN 85
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 317
G +++VG LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 318 VHGQGIKIEAAKSRKAP 368
G I +EA SR AP
Sbjct: 69 FDGSRITVEA--SRGAP 83
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.8 bits (116), Expect = 4e-07
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 317
++ GN+ + T+ L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 318 VHGQGIKIE--AAKSRKAPSTPTTKIFVGNLT 407
+ GQ +K+ A ++ ++ IFVG+L+
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156
Score = 34.7 bits (76), Expect = 0.025
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVV----ECDIV--------RNYGFVHMENEQVGR 287
F IFVG+LS + TDA L F + + + ++ R +GFV N+Q +
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 288 EAIQNLNGELVHGQGIK 338
AI +NG+ V + I+
Sbjct: 208 TAINEMNGKWVSSRQIR 224
Score = 30.3 bits (65), Expect = 0.54
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 314
++VGNLS + T DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.8 bits (116), Expect = 4e-07
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 317
++ GN+ + T+ L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 318 VHGQGIKIE--AAKSRKAPSTPTTKIFVGNLT 407
+ GQ +K+ A ++ ++ IFVG+L+
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
F IFVG+LS + TDA L F + + + ++ R +GFV N+Q + AI
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Query: 300 NLNGELVHGQGIK 338
+NG+ V + I+
Sbjct: 208 EMNGKWVSSRQIR 220
Score = 30.3 bits (65), Expect = 0.54
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 314
++VGNLS + T DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 5e-07
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +3
Query: 165 LSDKTTDADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQGI 335
LS TTD LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 336 KIEAAKSRKAPST 374
+E AK +AP+T
Sbjct: 138 FVETAKEVEAPTT 150
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 50.4 bits (115), Expect = 5e-07
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D L F +YG V++ I+ R +GFV ++E+ ++AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 300 NLNGELVHGQGIKIEAAKSR 359
+NG+ + G+ I + A+SR
Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 50.4 bits (115), Expect = 5e-07
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D L F +YG V++ I+ R +GFV ++E+ ++AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 300 NLNGELVHGQGIKIEAAKSR 359
+NG+ + G+ I + A+SR
Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 50.0 bits (114), Expect = 6e-07
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
F+I+VGNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 300 NLNGELVHGQGIKIEAAKSR 359
L+G+ + G+ IK+ A+ R
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
Score = 39.1 bits (87), Expect = 0.001
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVGNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 303 LNGELVHGQGIKIEAAKSR-----KAPST--PTTKIFVGNL 404
N V+G+ + + A R + P +I+VGNL
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNL 214
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 50.0 bits (114), Expect = 6e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 317
++VGN+ + T+ L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 318 VHGQGIKIE--AAKSRKAPSTPTTKIFVGNLT 407
+ GQ IK+ A ++ ++ IFVG+L+
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLS 147
Score = 39.5 bits (88), Expect = 9e-04
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
F IFVG+LS + TDA L F Y T + ++ R +GFV N+Q + AI
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198
Query: 300 NLNGELVHGQGIK 338
+ G+ + + I+
Sbjct: 199 EITGKWLGSRQIR 211
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 49.6 bits (113), Expect = 8e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 308
+FVGN +T +DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 35.5 bits (78), Expect = 0.014
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 141 TFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 317
T +FV N +T + D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 318 VHGQGIKIEAA 350
+ + + +E A
Sbjct: 152 ILDRVVSVEYA 162
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.6 bits (113), Expect = 8e-07
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 317
G +++VG LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 318 VHGQGIKIEAAKSRKAP 368
G I +E SR AP
Sbjct: 69 FDGSRITVEF--SRGAP 83
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 49.6 bits (113), Expect = 8e-07
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K++V LS +TT+ LR FE++G ++ ++V + + F+ E E+ +AIQ
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 303 LNGELVHGQGIKIEAAKSR 359
++G+ + G+ I +E AK+R
Sbjct: 138 MHGKFLDGRVIFVEEAKTR 156
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 49.6 bits (113), Expect = 8e-07
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Frame = +3
Query: 111 DVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHME 269
D T++ G G IF+ NL + L F +GT++ C + + YGFV E
Sbjct: 127 DPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFE 184
Query: 270 NEQVGREAIQNLNGELVHGQGIKI-------EAAKSRKAPSTPTTKIFVGNL 404
E+ + AI LNG L++ + + + E A+ P+ T ++V NL
Sbjct: 185 KEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
+++ NL D D L+ +F +YG V ++ R +GFV N + A+ +N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 309 GELVHGQGIKIEAAKSRK 362
G+++ + + I A+ ++
Sbjct: 394 GKMIGRKPLYIALAQRKE 411
Score = 32.7 bits (71), Expect = 0.10
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NL + + +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 309 G 311
G
Sbjct: 291 G 291
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 48.8 bits (111), Expect = 1e-06
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Frame = +3
Query: 117 ETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 272
+++ P T K+F+ LS T++ LR FE +G +VE I+ + Y F+
Sbjct: 273 DSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTT 332
Query: 273 EQVGREAIQNLNGELVHGQGIKIEAAKSR 359
E+ A++ +NG++++G I ++ AK++
Sbjct: 333 EEAAGTALKEMNGKIINGWMIVVDVAKTK 361
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.0 bits (109), Expect = 3e-06
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 296
T+ + V N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 297 QNLNGELVHGQGIKIEAAK 353
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.0 bits (109), Expect = 3e-06
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 296
T+ + V N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 297 QNLNGELVHGQGIKIEAAK 353
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.0 bits (109), Expect = 3e-06
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+F+G ++ + LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 303 LNGELVHGQGIKIEAAKSR 359
L+G +HG+ +K+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ F+G L+ T+D LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 300 NLNGELVHGQGIKIEAAK 353
+NG + G+ I ++ A+
Sbjct: 67 AMNGMDLDGRTITVDKAQ 84
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 317
++VGN+ + T+ L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 318 VHGQGIKIE--AAKSRKAPSTPTTKIFVGNLT 407
+ GQ IK+ A ++ ++ IFVG+L+
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLS 152
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
F IFVG+LS + TDA L F + + + ++ R +GFV N+Q + AI
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Query: 300 NLNGELVHGQGIK 338
+NG+ + + I+
Sbjct: 204 EMNGKWLSSRQIR 216
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 3e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
F+++VGNL + L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 300 NLNGELVHGQGIKIEAAKSR 359
L+G+ + G+ I++ A+ R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
Score = 41.5 bits (93), Expect = 2e-04
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQN 302
K+FVGNL+ L LFE+ GTV E D R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 303 LNGELVHGQGIKIEAAKSR-----KAPST--PTTKIFVGNL 404
N ++G+ + + A R +AP P +++VGNL
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNL 251
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.6 bits (108), Expect = 3e-06
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Frame = +3
Query: 111 DVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVEC----DIV---RNYGFVHME 269
D T++ G G +F+ NL + L F +GT++ C D+V + YGFV E
Sbjct: 123 DPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFE 180
Query: 270 NEQVGREAIQNLNGELVHGQGIKI-------EAAKSRKAPSTPTTKIFVGNL 404
E+ + AI LNG L++ + + + + A+S T ++V NL
Sbjct: 181 KEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNL 232
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
+++ NL D D L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 309 GELVHGQGIKIEAAKSRKAPSTPTTKIF 392
G+++ + + + A+ ++ +F
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLF 417
Score = 35.1 bits (77), Expect = 0.019
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
++V NL + TD +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 309 G 311
G
Sbjct: 287 G 287
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 46.8 bits (106), Expect = 6e-06
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
+FV NLS +T +D+ F G VV ++ N YGFV + ++A++N N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 309 GELVHGQGIKIEAAKSRKAPSTP 377
GE +H I I+ AK+ P P
Sbjct: 306 GEYLHDHKIFIDVAKTAPYPPGP 328
Score = 35.5 bits (78), Expect = 0.014
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 308
+FV NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 309 GELVHGQGIKIEAAKSRKAPSTP 377
GE + I ++ A ++KA P
Sbjct: 189 GECLDNNKIFLDVA-NKKATYLP 210
Score = 33.9 bits (74), Expect = 0.044
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 308
+FV NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 309 GELVHGQGIKIEAAKSRKAPSTP 377
GE + + I ++ + P P
Sbjct: 551 GENLRSREIFLDVVELAPYPLRP 573
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.8 bits (106), Expect = 6e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+F+G LS TT+ L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 303 LNGELVHGQGIKIEAAKSRKA 365
NG+ ++G+ I ++ AK++++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.8 bits (106), Expect = 6e-06
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 287
G+G +++VGNLS D L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 288 EAIQNLNGELVHGQGIKIEAAKSR 359
+AI +LNG + G+ I++ A++R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 39.9 bits (89), Expect = 7e-04
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVGNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 303 LNGELVHGQGIKIEA 347
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.8 bits (106), Expect = 6e-06
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 287
G+G +++VGNLS D L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 288 EAIQNLNGELVHGQGIKIEAAKSR 359
+AI +LNG + G+ I++ A++R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 39.9 bits (89), Expect = 7e-04
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVGNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 303 LNGELVHGQGIKIEA 347
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.8 bits (106), Expect = 6e-06
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 296
G +++VGNL ++ DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 297 QNLNGEL-VHGQGIKIEAAKSR-KAPSTPTTKIFVGNLTD 410
NLNG+L + G+ IK+ A + + P T+ G+L D
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT-TGDLDD 380
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 46.4 bits (105), Expect = 8e-06
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG L TD DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 324 GQGIKI 341
Q +++
Sbjct: 368 KQTVRL 373
Score = 36.3 bits (80), Expect = 0.008
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFVG+L+ +DA L F EKY +V +V + YGFV +E +A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 303 LNGELVHGQGIKIEAAKSRK 362
+NG + ++I A RK
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280
Score = 27.5 bits (58), Expect = 3.8
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 299
I+VG+L + +A L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 300 NLNGELVHG--QGIKIEAA-----KSRKAPSTPTTKIFVGNL 404
NG + Q ++ A + R + P IFVG+L
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDL 206
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.4 bits (105), Expect = 8e-06
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG L TD DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 324 GQGIKI 341
Q +++
Sbjct: 366 KQTVRL 371
Score = 35.1 bits (77), Expect = 0.019
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFVG+LS +D L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 303 LNGELVHGQGIKIEAAKSRK 362
+NG + ++I A RK
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG L T+ DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 324 GQGIKIEAAKS 356
+++ +S
Sbjct: 389 KNTVRLSWGRS 399
Score = 30.7 bits (66), Expect = 0.41
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFVG+L+ +DA L F +Y +V +V + YGFV +E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 303 LNGELVHGQGIKIEAAKSRKA 365
+NG + +++ A ++A
Sbjct: 275 MNGAFCSSRQMRVGIATPKRA 295
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 323
+F GN + DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 324 GQGIKIEAAKSRK 362
G+ +++E KS +
Sbjct: 64 GRRLRVEWTKSER 76
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 IFVGNL-SDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 326
+FV N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 158
Query: 327 QGIKIEAA 350
+ I +E A
Sbjct: 159 KVISVEYA 166
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Frame = +3
Query: 132 GAGTF-KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 284
GAG+ +++VGNLS D L LF + G VVE ++ + +GFV ++ Q
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Query: 285 REAIQNLNGELVHGQGIKIEAAKSR 359
+ AI++L+G + G+ I++ A++R
Sbjct: 259 QNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVGNL A L LFE G V +++ R +GFV M + A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 303 LNGELVHGQGIKIEA 347
NG + G+ +++ A
Sbjct: 152 FNGYELDGRPLRVNA 166
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 293
+G +FV NL + L F GT+V C + R YGFV + E + A
Sbjct: 131 SGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNA 190
Query: 294 IQNLNGELVHGQGIKI-----EAAKSRKAPSTPTTKIFVGNLTD 410
I+ LNG++++ + I + + + A T ++V NL++
Sbjct: 191 IEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSE 234
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NL D TD LR LF ++GT+ C ++R+ GFV + +N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 309 GELVHGQGIKIEAAKSRK 362
G++V G+ + + A+ ++
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NLS+ TTD +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 309 GE 314
G+
Sbjct: 287 GK 288
Score = 37.1 bits (82), Expect = 0.005
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
++VG+L TD+ L F + VV + R+ YG+V+ N +A+Q L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 306 NGELVHGQGIKIE-AAKSRKAPSTPTTKIFVGNL 404
N ++G+ I+I +++ A + +FV NL
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
KIFVG +S T + LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 303 LNGELVHGQGIKIEAAKSR 359
L+G+ +HG+ I++ A R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 308
+F GN ++DL LF KYG V D+ + FV+ME+E+ +AI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 IFVGNL-SDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 326
+FV N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 327 QGIKIEAA 350
+ I +E A
Sbjct: 158 KVISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 308
+F GN ++DL LF KYG V D+ + FV+ME+E+ +AI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 IFVGNL-SDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 326
+FV N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 327 QGIKIEAA 350
+ I +E A
Sbjct: 158 KVISVEYA 165
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
++ FVG L+ T D DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 300 NLNGELVHGQG 332
+NG G G
Sbjct: 66 EMNGSGGGGGG 76
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 44.4 bits (100), Expect = 3e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 305
++VG + T+ DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 306 NGELVHGQGIKIE 344
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 302
+++VGNLS TTD LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 303 LNGELVHGQGIKIE 344
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 44.0 bits (99), Expect = 4e-05
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 16/102 (15%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 305
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 306 NGELVHGQGIKIEAAKSRK--------APS-TPTTKIFVGNL 404
G+ +K++ AK++K PS PT +FV NL
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANL 196
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV L+ T D DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 306 NGELVHGQGIKIEAAKS 356
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 44.0 bits (99), Expect = 4e-05
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
++V NL + TDADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 309 GELVHGQGIKIEAAKSRKAPSTPTTK 386
G +V + + + A+ RK T K
Sbjct: 181 GVVVDEKELHVGRAQ-RKTNRTEDLK 205
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
++V NL D + L LF ++GT+ C ++ + GFV + +A+ +N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 309 GELVHGQGIKIEAAKSRK 362
G++V + I + A+ ++
Sbjct: 285 GKMVGNKPIYVSLAQCKE 302
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 43.6 bits (98), Expect = 5e-05
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 323
I V NL T+ +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 324 GQGIKIEAAKS 356
Q ++I +K+
Sbjct: 299 QQAVRISWSKN 309
Score = 31.5 bits (68), Expect = 0.23
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Frame = +3
Query: 123 KMPGAGTFKIFVGNLSDKTTDADLRPLFE-KYGTVVECDIV--------RNYGFVHMENE 275
K+ IFVG+L+ TD L+ F Y +V +V + YGFV E
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 276 QVGREAIQNLNGELVHGQGIKIEAAKSRK 362
A+ +NG + ++I AA +K
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAATPKK 197
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 43.6 bits (98), Expect = 5e-05
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG + T+ DL+ +F ++G +V I + GFV N +A+ LNG +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 324 GQGIKIEAAKS 356
GQ I++ +S
Sbjct: 340 GQSIRLSWGRS 350
Score = 29.5 bits (63), Expect = 0.94
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+FVG+L+ TD L F+ Y +V +V + YGFV +E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 303 LNGELVHGQGIKIEAAKSRK 362
+NG+ + ++ A ++K
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+++VGNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 303 LNGELVHGQGIKI 341
N + G+ +K+
Sbjct: 177 FNSSQIGGRTVKV 189
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 303 LNGELVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
+NG V G+ +++ A R+ P+ + G
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEG 311
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 43.2 bits (97), Expect = 7e-05
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG L TD +L+ +F ++G ++ I + GFV N+ A+ LNG +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 324 GQGIKIEAAKS 356
GQ I++ +S
Sbjct: 322 GQSIRLSWGRS 332
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFVG+L+ + TD L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 303 LNGELVHGQGIKIEAAKSRKA-PSTP 377
+NG+ + ++I A ++ A P P
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQP 241
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 43.2 bits (97), Expect = 7e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+IFVG LS + TD DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 303 LNGELVHGQGIKIEAAKSR 359
++G + I + A+ +
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NL++ TTD DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 309 G 311
G
Sbjct: 91 G 91
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 296
T KIFVG + T+ +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 297 QNLNGELVHGQGIKIEAAKSRKA 365
N + ++I+ A+ +K+
Sbjct: 168 SKGNMIDMADTQVEIKKAEPKKS 190
Score = 39.5 bits (88), Expect = 9e-04
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 287
GA KIF+G L TT+ F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 288 EAIQN---LNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNL 404
+ I++ +NG+ V + + A ++ T KIFVG +
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGI 116
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 43.2 bits (97), Expect = 7e-05
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQ 299
++VGN T +DL LF K+G V D+ Y FV+ E+E+ +AI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 33.1 bits (72), Expect = 0.076
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 141 TFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 317
T +FV N +T + D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 318 VHGQGIKIEAA 350
+ + + +E A
Sbjct: 154 LLDKVVSVEYA 164
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 43.2 bits (97), Expect = 7e-05
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
+FVG L TD L+ +F +YG +V I + GFV + EA++ LNG +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 324 GQGIKIEAAKS 356
G +++ +S
Sbjct: 323 GTTVRLSWGRS 333
Score = 29.5 bits (63), Expect = 0.94
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 296
+ IFVG+L+ TD L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 297 QNLNGELVHGQGIKIEAAKSRK 362
+NG + ++I A S+K
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKK 236
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.7 bits (96), Expect = 9e-05
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 302
K+++G LS T + L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 303 LNGELVHGQGIKIEAAKSRKAPSTP 377
+NG+ ++G I + AK PS P
Sbjct: 92 MNGQELNGFNISVNVAKD--WPSLP 114
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 42.7 bits (96), Expect = 9e-05
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 156 VGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 329
V NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 330 GIKIEAAKS 356
+ +E AKS
Sbjct: 414 ALNVEIAKS 422
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 323
IFVG + D DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 324 GQGIKIEAAKS 356
+++ +S
Sbjct: 383 KNTVRLSWGRS 393
Score = 33.9 bits (74), Expect = 0.044
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+FVG+LS TD L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 303 LNGELVHGQGIKIEAAKSRKA 365
+NG + +++ A ++A
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
Score = 30.7 bits (66), Expect = 0.41
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
++VG+L + L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 306 NGELV--HGQGIKIEAA-----KSRKAPSTPTTKIFVGNLT 407
+G ++ Q +I A + R + P +FVG+L+
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLS 210
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 42.7 bits (96), Expect = 9e-05
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +3
Query: 117 ETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMEN 272
++K G +FVG LS TT+ LR + KYG + +VR+ YGFV E
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
Query: 273 EQVGREAIQNLNGELVHGQGIKIEAAKSRKAP 368
E+ A ++ + L+ G+ I ++ + + P
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+IFVG LS T+ L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 303 LNGELVHGQGIKIEAAKSR 359
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
+IFVG LS T+ L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 303 LNGELVHGQGIKIEAAKSR 359
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.7 bits (96), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
++VGNL + ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 315 LVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 42.7 bits (96), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
++VGNL + ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 315 LVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.7 bits (96), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
++VGNL + ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 315 LVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++VG L T+ +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 309 GELVHGQGIKIEAAKSRKAPSTP 377
G+ + G+ +++ +R P
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNP 91
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
KIFVGNL+ +TT DLR FE++G VV+ ++V + YGF+ + A+QN
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 305
++VG L + ++ L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 306 NGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNL 404
N +HG+ I++ A K +F+GNL
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNL 119
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQ 299
G ++V NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARS 169
Query: 300 NLNGELVHGQGIKI-----EAAKSRKAPSTPTTKIFVGNLTD 410
L+G +V+G+ + + + ++ A + +T ++V NL +
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIE 211
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
++V NLS+ + LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 309 GELVHGQGIKIEAAKSRK 362
G LV G+ I + A+ ++
Sbjct: 366 GFLVDGKPIVVRVAERKE 383
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVGNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 303 LNGELVHGQGIKIEAAKSRK 362
L+G + G+ I++ A+ +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NLS+ +D +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 309 GELVHGQGIKIEAAKSRKAPSTPTTKIFVGNLTD 410
G+ + + A+ + T + F +L +
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKE 319
Score = 40.3 bits (90), Expect = 5e-04
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 293
+G IF+ NL L F +G ++ C + + YGFV + ++ + A
Sbjct: 130 SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 294 IQNLNGELVHGQGIKIE--AAKSRKAPS---TPTTKIFVGNLTD 410
I LNG L++ + + + K ++ PS T ++V NL++
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSE 233
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
++V NL + TD LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 309 GELVHGQGIKIEAAKSRK 362
G+++ + + + A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 293
GT ++VG+L TD+ L F + G VV + R+ YG+V+ Q A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 294 IQNLNGELVHGQGIKI-EAAKSRKAPSTPTTKIFVGNL 404
+ LN ++G+ I++ + + + IF+ NL
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNL 140
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 3e-04
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
KIFVG L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 303 LNGELVHGQGIKIEAAKSRKAPST---PTTKIFVGNL 404
+ ++ G+ ++I+ R + S+ T KIFVG +
Sbjct: 102 -DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGI 137
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 41.1 bits (92), Expect = 3e-04
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 287
GA T KIFVG L T+A+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 288 EAIQNLNGELVHGQGIKIEAAKSRKAPS-TPTTKIFVG 398
+ EL +G+ ++++ A ++ S TP +G
Sbjct: 178 MVLHKTFHEL-NGKMVEVKRAVPKELSSTTPNRSPLIG 214
Score = 34.7 bits (76), Expect = 0.025
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +3
Query: 117 ETKMPGAGTF-KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHME 269
E KM A K+F+G +S T + L+ F KYG +VE I+R+ +GF+
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
Query: 270 NEQVGREAIQNLNGELVHGQGIKIEAAKSR 359
+ V I ++ ++ G+ ++ + A R
Sbjct: 65 DPSVAERVI--MDKHIIDGRTVEAKKAVPR 92
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 296
T KIFVG + T+ +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 297 QNLN 308
N
Sbjct: 168 SKGN 171
Score = 39.5 bits (88), Expect = 9e-04
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 287
GA KIF+G L TT+ F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 288 EAIQN---LNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNL 404
+ I++ +NG+ V + + A ++ T KIFVG +
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGI 116
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 40.7 bits (91), Expect = 4e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 311
++V ++ + T+ L LF +G VV+C I V + F+ +E VG NL+G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDE-VGARTALNLSG 210
Query: 312 ELVHGQGIKIEAAKSRKAPSTPT 380
++ +K+ +K+ AP PT
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPT 233
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Frame = +3
Query: 120 TKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDI-------VRNYGFVHMENEQ 278
T G+ +F GNLS + +D+ F++ G VV+ + + YG + + +
Sbjct: 376 TNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPE 435
Query: 279 VGREAIQNLNGELVHGQGIKIEAAKSRKAP 368
++A++ +NG+L+ G+ ++++ A R P
Sbjct: 436 EAQKALE-MNGKLLLGRDVRLDLANERGTP 464
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 308
++VG+L+ +TT++DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 309 G 311
G
Sbjct: 80 G 80
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 243 RNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
RN+ V + + R+ + L G L + IKI + P T + G
Sbjct: 399 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSG 450
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 40.3 bits (90), Expect = 5e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
I+VGNL + ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 315 LVHGQGIKIEAAKSRKAPS 371
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 40.3 bits (90), Expect = 5e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
I+VGNL + ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 315 LVHGQGIKIEAAKSRKAPS 371
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
++++GN+ T+ L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 303 LNGELVHGQGIKIEAAKSRKAPS 371
LNG V G+ IK+ + A S
Sbjct: 137 LNGNTVEGREIKVNITEKPIASS 159
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHM 266
AD E + G FK+FVG+L+ + T+ ++ +F ++G V + ++R+ GFV
Sbjct: 199 ADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258
Query: 267 ENEQVGREAIQNLNG 311
+++ AI LNG
Sbjct: 259 SSKETAMAAIDGLNG 273
Score = 37.5 bits (83), Expect = 0.004
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 290
+ T K+FVG++ T+ ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 291 AIQNLNGE--LVHGQG-IKIEAAK-SRKAPSTPTTKIFVGNL 404
AI+ L+ + L G G +++ A R+ T K+FVG+L
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSL 218
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHM 266
AD E + G FK+FVG+L+ + T+ ++ +F ++G V + ++R+ GFV
Sbjct: 199 ADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258
Query: 267 ENEQVGREAIQNLNG 311
+++ AI LNG
Sbjct: 259 SSKETAMAAIDGLNG 273
Score = 37.5 bits (83), Expect = 0.004
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 290
+ T K+FVG++ T+ ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 291 AIQNLNGE--LVHGQG-IKIEAAK-SRKAPSTPTTKIFVGNL 404
AI+ L+ + L G G +++ A R+ T K+FVG+L
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSL 218
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.5 bits (88), Expect = 9e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
KIFVG L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 303 LNGELVHGQGIKIE-AAKSRKAPSTPTT 383
+N ++ G+ A + P PT+
Sbjct: 83 MN-PVIDGRRANCNLACLGAQKPRPPTS 109
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 39.5 bits (88), Expect = 9e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FV +S +T+ L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 306 NGELVHGQGIKIEAAKSRKAPSTPTTK 386
N +LV G+ + ++ K+ K + P TK
Sbjct: 83 NAQLVDGRVVILDTTKAAK-HNPPDTK 108
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +3
Query: 129 PGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 284
PG T KIFVG L T++D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 285 REAIQNLNGELVHGQGIKIEAAKSRKAPSTPT 380
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
Score = 31.1 bits (67), Expect = 0.31
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 296
K+F+G +S T + L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 297 -QNLNGELVHGQ 329
N++G LV +
Sbjct: 67 KHNIDGRLVEAK 78
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +3
Query: 129 PGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 284
PG T KIFVG L T++D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 285 REAIQNLNGELVHGQGIKIEAAKSRKAPSTPT 380
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
Score = 31.1 bits (67), Expect = 0.31
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 296
K+F+G +S T + L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 297 -QNLNGELVHGQ 329
N++G LV +
Sbjct: 67 KHNIDGRLVEAK 78
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 IFVGNL-SDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 326
+FV N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 327 QGIKIEAA 350
+ I +E A
Sbjct: 118 KVISVEYA 125
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 126 MPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 290
M G + I+VGNL + ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 291 AIQNLNGELVHGQGIKIEAAKSRKAPST 374
AI+ +G + G +++E A + S+
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSS 88
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 320
+ VGN+S D +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 321 HGQGIKIEAAKSRKAPSTPTTK---IFVGNL 404
G + I + S++ PS T + V NL
Sbjct: 279 RGTKLDIRYSISKENPSQKDTSKGALLVNNL 309
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 305
K+FVG L ++A+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 306 NGE 314
NG+
Sbjct: 167 NGK 169
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+FVG + +++ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 305
K+FVG L ++A+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 306 NGE 314
NG+
Sbjct: 167 NGK 169
Score = 32.3 bits (70), Expect = 0.13
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +3
Query: 114 VETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHME 269
V+T+ P +F+ N+ + D +L F+ +G V+ + + +GFV +
Sbjct: 341 VQTEGPEGAN--LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
Query: 270 NEQVGREAIQNLNGELVHGQGIKIE 344
++ + AI +NG + G+ +K++
Sbjct: 399 SQAAAQNAIDMMNGRHLGGKKLKVQ 423
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+FVG + +++ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.005
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Frame = +3
Query: 126 MPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 281
+P G+ ++F+G L + DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 282 GREAIQNLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNL 404
++AI+ L+ + G+ I+ ++++ ++F+GN+
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSETK-------NRLFIGNI 203
Score = 35.5 bits (78), Expect = 0.014
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 311
++V N+ + T+ L+ LF+++G V + R++GFVH +A+++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 312 ELVHGQGIKIEAAK 353
V+GQ +++ AK
Sbjct: 354 YEVNGQPLEVVLAK 367
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FVGN+ T+ LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 306 NGELVHGQGIKIEAAKSRK 362
++G+ ++++ A++ K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 36.7 bits (81), Expect = 0.006
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV SD ++ L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 306 NGELVHGQGIKIE 344
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Frame = +3
Query: 156 VGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 311
V NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 36.7 bits (81), Expect = 0.006
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 308
+ V NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 309 GELVHGQGIKIEAAKSRKAP-----STPTTKIFVGNLTD 410
GE +H KI K ++P + T +FV NL D
Sbjct: 220 GEYLHNH--KILLMKGHESPGFAEEAAITKTLFVANLRD 256
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 36.7 bits (81), Expect = 0.006
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 314
I+VGNL ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 315 LVHGQGIKIEAA 350
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FV LS +TT LR F ++G V + +V + +GFV + + I +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 306 NGELVHGQGIKIEAAKSRK 362
+G+ + G I E A+ R+
Sbjct: 118 DGKFLDGWVIFAEYARPRE 136
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+++G L D L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 306 NGELVHGQGIKIEAAKSRKAPSTP 377
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+++G L D L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 306 NGELVHGQGIKIEAAKSRKAPSTP 377
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 36.3 bits (80), Expect = 0.008
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 296
T KIFVG L TD + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 297 QNLNGELVHGQGIKIEAAKSRKA 365
+L G+ ++++ A + A
Sbjct: 169 HKTFHDL-SGKQVEVKRALPKDA 190
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+FVG +S +T + LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
IFV TT +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +3
Query: 132 GAGTF-KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 284
G TF K+FVG L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 285 REA 293
R A
Sbjct: 79 RRA 81
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 275
G T KIFVG L T+ + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 276 QVGREAIQNLNGELV 320
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 33.1 bits (72), Expect = 0.076
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+F+G +S T + LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 275
G T KIFVG L T+ + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 276 QVGREAIQNLNGELV 320
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 33.1 bits (72), Expect = 0.076
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+F+G +S T + LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 275
G T KIFVG L T+ + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 276 QVGREAIQNLNGELV 320
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 33.1 bits (72), Expect = 0.076
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K+F+G +S T + LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 35.9 bits (79), Expect = 0.011
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 290
+G + + NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 291 AIQNLNGELVHGQGIKIE-AAKSRKAPSTPTT 383
A++ +N +++ G+ I I A ++RK P T
Sbjct: 104 AMKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 287
T ++VGNLS K + L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 288 EAIQNLNGELVHGQGIKIEAAKSRKAPS 371
A + G +V+ +KI K+ PS
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKAVSLPS 265
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.5 bits (78), Expect = 0.014
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFV L TT +L+ FE YG + EC +V + +GFV + + R A++N
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.019
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 156 VGNLSDKTTDADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 311
V NLS+ T + DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 312 ELVHGQGIKIEAAKSR 359
+++E A R
Sbjct: 277 YGYDNLILRVEWATPR 292
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.1 bits (77), Expect = 0.019
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 299
F+IFVG+L ++ DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 300 NLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNL 404
L +++G+ + A++ +FVGN+
Sbjct: 274 ELKSPMINGKKCGVTASQDNDT-------LFVGNI 301
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.1 bits (77), Expect = 0.019
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 303 LNGELVHGQGIKIEAAK-SRKAPSTP 377
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.1 bits (77), Expect = 0.019
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 303 LNGELVHGQGIKIEAAK-SRKAPSTP 377
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.1 bits (77), Expect = 0.019
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
IFVG+LS +D L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 303 LNGELVHGQGIKIEAAKSRK 362
+NG + ++I A RK
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 174 KTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEA 347
K DA LR +F +G + + + R+Y FV N +A ++L G+L + I
Sbjct: 162 KVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICF 221
Query: 348 AKSRKAPS 371
AKS + S
Sbjct: 222 AKSEPSSS 229
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 296
T KIFVG LS TT+ + + FE++G + ++ R +GFV ++E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178
Query: 297 QNLNGEL 317
Q+ EL
Sbjct: 179 QSNFHEL 185
Score = 34.3 bits (75), Expect = 0.033
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 275
+K+FVG ++ +T++ L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +3
Query: 132 GAGTF-KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 284
G TF K+FVG L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 285 REA 293
R A
Sbjct: 79 RRA 81
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.033
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGREAIQN---L 305
I+VGN+ T +++ F+ GTV I+ + GF ++E +V EA+QN L
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV--EAVQNSLIL 162
Query: 306 NGELVHGQGIKIEAAKS 356
N +HG+ IK+ A ++
Sbjct: 163 NESELHGRQIKVSAKRT 179
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.9 bits (74), Expect = 0.044
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV SD ++ L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 306 NGEL 317
NG++
Sbjct: 120 NGKV 123
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.9 bits (74), Expect = 0.044
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Frame = +3
Query: 111 DVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYG-TVVECDIV--------RNYGFVH 263
D+ + PG K++V NL+ K LR LF V +V YGFV
Sbjct: 183 DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVS 242
Query: 264 MENEQVGREAIQNLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNLTD 410
+ AI LNG+ + G+ I ++ + + S + N ++
Sbjct: 243 FATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
Score = 32.3 bits (70), Expect = 0.13
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 305
K+FV NL + D+ LF + GTV +I+ R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 306 NGELVHGQGIKIEAAKSRKAPS 371
+ V G+ I + A+ K P+
Sbjct: 156 DTFQVSGRIISVSFARRFKKPT 177
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 33.5 bits (73), Expect = 0.058
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +3
Query: 126 MPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 281
+P G+ ++++G + T+ DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 282 GREAIQNLNGELVHGQGIKIEAAKSR 359
EAI LN G+ IK +++
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAK 171
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+++ NL T L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 306 NGELVHGQGIKIEAAKSRKAPSTPTTKI 389
+ G + AK + T T +
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTV 357
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.058
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 308
+FV NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 309 GELVHGQGI 335
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.5 bits (73), Expect = 0.058
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 284
T KIFVG L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 285 REAIQNLNGELV 320
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.5 bits (73), Expect = 0.058
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 305
K+FVG L ++ +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 306 NG-ELVHGQGIKI 341
NG ++ G + +
Sbjct: 170 NGRHIMEGANVPL 182
Score = 32.3 bits (70), Expect = 0.13
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVH 263
+ ++T+ P AG +F+ N+ + D +L F+ +G V+ + + +GF+
Sbjct: 329 SSLQTEGP-AGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 386
Query: 264 MENEQVGREAIQNLNGELVHGQGIKIE 344
+++ + AI +NG + G+ +K++
Sbjct: 387 YDSQAAAQNAINTMNGCQLSGKKLKVQ 413
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.5 bits (73), Expect = 0.058
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 305
K+FVG L ++ +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 306 NG-ELVHGQGIKI 341
NG ++ G + +
Sbjct: 161 NGRHIMEGANVPL 173
Score = 32.3 bits (70), Expect = 0.13
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVH 263
+ ++T+ P AG +F+ N+ + D +L F+ +G V+ + + +GF+
Sbjct: 320 SSLQTEGP-AGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 377
Query: 264 MENEQVGREAIQNLNGELVHGQGIKIE 344
+++ + AI +NG + G+ +K++
Sbjct: 378 YDSQAAAQNAINTMNGCQLSGKKLKVQ 404
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.1 bits (72), Expect = 0.076
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 287
G K++VGNL ++ LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 288 EAIQNLNGEL-VHGQGIKIEA 347
A LNG+L + G+ IK+ +
Sbjct: 321 AAQIALNGKLEIAGRTIKVSS 341
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.1 bits (72), Expect = 0.076
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVE 230
K++V +S T+ D+R +FEKYG V E
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTE 138
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVEC-------DIVRNYGFVHMENEQVGREAIQNL 305
K++V L+ +TT ++ +F +YG + + I R Y FV +++ AI+ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 306 NG 311
NG
Sbjct: 268 NG 269
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.1 bits (72), Expect = 0.076
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 141 TFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 317
T +FV N +T + D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 318 VHGQGIKIEAA 350
+ + + +E A
Sbjct: 128 LLDKVVSVEYA 138
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.076
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ +T ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 303 LNGELVHGQGIKIEAAK---SRKAPSTP 377
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.076
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ +T ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 303 LNGELVHGQGIKIEAAK---SRKAPSTP 377
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.076
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ +T ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 303 LNGELVHGQGIKIEAAK---SRKAPSTP 377
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.7 bits (71), Expect = 0.10
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 117 ETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY 251
E + P +IFV + +++D R FE+YG + + + ++Y
Sbjct: 82 EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.1 bits (57), Expect = 5.0
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
KIFVG L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 303 LNGELVHGQGIKIEAA 350
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 32.7 bits (71), Expect = 0.10
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 293
K+FVG L+ +T LR FE++G +VE ++ + YGFV + + ++A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 32.7 bits (71), Expect = 0.10
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 293
K+FVG L+ +T LR FE++G +VE ++ + YGFV + + ++A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.3 bits (70), Expect = 0.13
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 305
+ V NL DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 306 NGELVHGQGIKIE-AAKSRKAPSTPTTK 386
+G L+ G+ + + A ++RK P+ T+
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTR 126
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.9 bits (69), Expect = 0.18
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 150 IFVGNLSDKTTDAD-LRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 317
+ V NL+ + D D L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 318 VHGQGIKIEAAK 353
+ G+ +++ +K
Sbjct: 307 LFGKRLEVNFSK 318
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/82 (18%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FV L+ +++++ ++ FE YG + +V + Y F+ + + + A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 306 NGELVHGQGIKIEAAKSRKAPS 371
+G+ + G+ + ++ + R P+
Sbjct: 200 DGQKIDGRRVLVDVERGRTVPN 221
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.23
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 305
+ V NL DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 306 NGELVHGQGIKIE-AAKSRKAPS 371
+G L+ G+ + + A ++RK P+
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPT 120
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 31.1 bits (67), Expect = 0.31
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 299
+++F G+L ++ D L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 300 NLNGELVHGQGIKI 341
+NG+ V + IK+
Sbjct: 197 EMNGKYVGNRPIKL 210
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.1 bits (67), Expect = 0.31
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENE 275
F +VGNL T + DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 0.54
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 308
+FVGN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 309 GELVHGQGIKIEAAKSRKAPSTPTTKIFVG 398
+HG+ +K+ +K + P K F G
Sbjct: 153 ESELHGRQLKV----LQKRTNVPGLKQFRG 178
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVE 230
G G F +FVG+L TTDA+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 0.54
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 21/104 (20%)
Frame = +3
Query: 156 VGNLSDKTTDADLRPLFE---KYGTVVECDIVRN----------YGFVHMENEQVGREAI 296
V NLS KTTD L+ F K G ++ I+++ YGFV ++ +
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 297 QNLNGELVHGQGIKIEAAKSRKAPST--------PTTKIFVGNL 404
++L G ++ G + + +++++ P TK+ V N+
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNI 676
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 30.3 bits (65), Expect = 0.54
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 320
++VG L+ + + D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 321 HGQGIKI 341
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 29.9 bits (64), Expect = 0.71
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG +S +TT F K+G VV+ I+ R +GFV + V + ++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE- 125
Query: 303 LNGELVHGQGIKIEAAKSRKAPST------PTTKIFVGNL 404
++ + + ++ R T T KIFVG L
Sbjct: 126 -EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGL 164
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 275
T KIFVG L + +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 29.9 bits (64), Expect = 0.71
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENE 275
+FVG L TD L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 29.5 bits (63), Expect = 0.94
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 296
+ IFVG+L+ TD L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 297 QNLNGELVHGQGIKIEAAKSRK 362
+NG + ++I A S+K
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKK 236
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 249 YGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNLTDK 413
YGFV + + A++ NGE +H I + AK+ AP P K NL +K
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT--APYPPRIKY---NLAEK 773
>At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GI:5924383 from [Daucus
carota]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 361
Score = 29.5 bits (63), Expect = 0.94
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +3
Query: 189 DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSRKAP 368
D+ L EK + CD +GF + N V E ++N+ G+ +E +
Sbjct: 66 DISNLDEKSVSKAVCDAAEEWGFFQVINHGVSMEVLENMKTATHRFFGLPVEEKRKFSRE 125
Query: 369 STPTTKIFVG 398
+ +T + G
Sbjct: 126 KSLSTNVRFG 135
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 320
+FV N++ D++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 321 HGQGIKIEAAKSRKAPS 371
+ + I + + PS
Sbjct: 230 RRRKLDIHFSIPKDNPS 246
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 320
+FV N++ D++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 321 HGQGIKIEAAKSRKAPS 371
+ + I + + PS
Sbjct: 230 RRRKLDIHFSIPKDNPS 246
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 320
++VG L+ + + D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 321 HGQGIKI 341
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVE 230
G +FVG L TTDA++ + +YG V E
Sbjct: 200 GNTMLFVGELHWWTTDAEIESVLSQYGRVKE 230
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
K++VGNL T LR F K+GT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+++G + + ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 306 NGELVHGQGIKI 341
N L+ +K+
Sbjct: 122 NDYLLMEHMLKV 133
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV 242
K+F+ L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV 242
K+F+ L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 28.3 bits (60), Expect = 2.2
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 317
+ V +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 318 VHGQGIKIEAA 350
G+ ++++ A
Sbjct: 90 FLGKVLQVQRA 100
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
G +IFVG L T++ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
G +IFVG L T++ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
G +IFVG L T++ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.5 bits (58), Expect = 3.8
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 296
G ++++GNL+ TT+ D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 297 QNLNGELVHGQGIKIEAA-KSRKA 365
L+ +++ G+ +KI A K R A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPA 342
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 27.5 bits (58), Expect = 3.8
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 302
K+FVG L+ T + F KYG ++E I+ + YGFV ++ + A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 303 LNGELVHGQGIKIEAA----KSRKAPS 371
+ +++G+ A + RK+P+
Sbjct: 78 -STPIINGRRANCNLASLGGRLRKSPT 103
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVEC-DIVRNYGFVHME--NEQVGREAIQNLNGELV 320
+FV N++ D++L LFE +G + ++ GFV + + + A++ L L+
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLL 246
Query: 321 HGQGIKIEAAKSRKAPS 371
+ + I + ++ PS
Sbjct: 247 RKRTLDIHFSIPKENPS 263
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVEC-DIVRNYGFVHME--NEQVGREAIQNLNGELV 320
+FV N++ D++L LFE +G + ++ GFV + + + A++ L L+
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLL 259
Query: 321 HGQGIKIEAAKSRKAPS 371
+ + I + ++ PS
Sbjct: 260 RKRTLDIHFSIPKENPS 276
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 243 RNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSR 359
RN+G H +N+ V E + + HG +K + + R
Sbjct: 11 RNHGGTHCQNDAVDEENRRRRHNHHTHGDEVKCSSKRCR 49
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 5.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +3
Query: 132 GAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGR 287
G+ + V N+ +LR FE++G V + I R+Y FV +
Sbjct: 43 GSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAG 102
Query: 288 EAIQNLNGELVHGQGIK-IEAAKSRKAPSTPTTK 386
EA +++N G+ I + A++SRK P K
Sbjct: 103 EAQRSMNRRSFAGREITVVVASESRKRPEEMRVK 136
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L T L F++YG + +C V + YGF+ ++ R A++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L T L F++YG + +C V + YGF+ ++ R A++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L T L F++YG + +C V + YGF+ ++ R A++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 299
KIFV L T L F++YG + +C V + YGF+ ++ R A++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
>At4g27630.2 68417.m03972 expressed protein
Length = 467
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 7 GHFVVDLRLRVAWKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVLSKSS 156
G + ++ RL ++ R ++ +FS+VF F C LL L PVLS+ +
Sbjct: 24 GLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPVLSREA 73
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 147 KIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQ 299
K+ V N +D KT+ +++ + + + EC I ++ +NE +G+E ++
Sbjct: 67 KVVVPNRADIKTSVEEVKAIIDDSEALYECLIEEGEEYLLEKNEMMGKEIVK 118
>At1g64990.1 68414.m07366 expressed protein contains similarity to
putative G-protein coupled receptor GI:6649579 from
[Homo sapiens]
Length = 468
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 7 GHFVVDLRLRVAWKLYR*ILCYLFSLVFTFLC*LLTSKLKCRAPVLSKSS 156
G + ++ RL ++ R ++ +FS+VF F C LL L PVLS+ +
Sbjct: 24 GLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPVLSREA 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,493,089
Number of Sequences: 28952
Number of extensions: 131627
Number of successful extensions: 645
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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