Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A21
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 124 5e-30
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.039
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.5
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 4.5
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.5
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.5
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 4.5
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 6.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 6.0
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 24 6.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 6.0
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 7.9
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 24 7.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 124 bits (298), Expect = 5e-30
Identities = 58/97 (59%), Positives = 73/97 (75%)
Frame = -3
Query: 348 FVGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQL 169
F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR R DG +
Sbjct: 94 FIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKT 151
Query: 168 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 152 IKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.039
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -3
Query: 270 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 94
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 93 KLTGREVTFEFP 58
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 86 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 214
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 86 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 214
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 240 IWRHIQKSVSWNGAFSVSWLHVSCGWAWAGS 332
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 160 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPF 285
H D + ++ +DA F+N+ + + + G+IYRS CP F
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNF 81
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 86 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 214
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 86 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 214
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 234 LPIWRHIQKSVSWNGAFSVSWL-HVSCG 314
LP+WR Q ++S N +V + H+ G
Sbjct: 13 LPVWRRYQSNISINSIRNVGIIAHIDAG 40
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 137 VCWFLSRCTLMSCEPSSF 190
+ WFLSR + + PSSF
Sbjct: 3 ISWFLSRFRIRTVAPSSF 20
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 159 HLDKNQQTTIEHKVDTFQSV 100
H+D NQQT ++H+ F+SV
Sbjct: 967 HID-NQQTLLQHRNQWFESV 985
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 72 SLRAPSTSCIQTGRCQPCV 128
+L AP SCI T + +PC+
Sbjct: 355 ALSAPYESCIVTKKPEPCI 373
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 131 IVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNM 244
I V W C+L P F+L +L IS N R M
Sbjct: 1173 IEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRM 1210
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 168 IKVHLDKNQQTTIEHKVDTFQSV 100
+K+HL+K +T + HK + V
Sbjct: 271 VKIHLNKPAKTLVPHKTQSLVDV 293
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 57 RGTRKSLRAPSTSCIQTGRCQ 119
+GTR +L +P+ SC G Q
Sbjct: 13 QGTRSNLESPTLSCSSKGAMQ 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,950
Number of Sequences: 5004
Number of extensions: 31068
Number of successful extensions: 104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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