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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A21
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   105   1e-23
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   103   4e-23
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     31   0.19 
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    30   0.59 
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    29   0.78 
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885...    28   2.4  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    27   3.1  
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159...    27   5.5  
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565...    26   7.2  
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    26   9.6  
05_04_0262 - 19514426-19515625                                         26   9.6  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  105 bits (252), Expect = 1e-23
 Identities = 48/96 (50%), Positives = 73/96 (76%)
 Frame = -3

Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
           V  R+I+  P   + V    +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++I
Sbjct: 96  VATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVI 151

Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
           K+ LD  ++   E+K++TF +VY++L G++V FE+P
Sbjct: 152 KIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  103 bits (247), Expect = 4e-23
 Identities = 47/96 (48%), Positives = 70/96 (72%)
 Frame = -3

Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
           V  R+I+  P   + V     RPR+RTLT+V+D ILED+V+PAEIVGKR+R  LDG +++
Sbjct: 109 VATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIM 164

Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
           K+ LD  ++   E+K+DTF SVY++L G++V F++P
Sbjct: 165 KIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 279 PRSRTLTSVYDAILEDLVFPAEIVG 205
           PR+RTL +V+D ILED+V    ++G
Sbjct: 99  PRTRTLITVHDGILEDVVSQLRLLG 123


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 228 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 121
           +FPA I G  +  KLD ++L K H D+ +   ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623


>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 279 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 163
           P +RTLT+ +D IL+D +  A+I GK +    + + +IK
Sbjct: 86  PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123


>02_02_0312 +
           8855664-8855807,8856402-8856465,8858399-8858547,
           8859258-8859674
          Length = 257

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 70  SHFAPRQLLVYRLEGVNLVFNS 135
           +H A +++L   ++GVNLVFNS
Sbjct: 59  AHCASKEILSSSIDGVNLVFNS 80


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +2

Query: 92  FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 271
           FL +D     +CS +   F+  C L   E   F L+   TI+      + MA+ T  +  
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516

Query: 272 ERGLFC*LATRVLWLGLG 325
             GL+  LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532


>06_01_0209 +
           1587656-1587876,1587964-1588055,1590520-1590545,
           1591130-1591370,1591459-1591554,1591639-1591754,
           1591837-1591917,1592597-1592720,1593222-1593271,
           1593735-1593825,1594386-1594421,1594502-1594602,
           1594684-1594800
          Length = 463

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 222 PAEIVGKRIRVKLDG-SQLIKVHLDK 148
           PA +VG+R+ VKL G  +L K  +DK
Sbjct: 10  PAAVVGERVAVKLRGYFELAKEEIDK 35


>08_02_0396 -
           16654603-16655030,16655803-16655906,16655988-16656579,
           16656820-16656993,16657105-16657309
          Length = 500

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 150 KNQQTTIEHKVDTFQSVYKKL 88
           KNQ+ +I HKVDT     +KL
Sbjct: 188 KNQRASISHKVDTVSKESEKL 208


>08_02_1547 +
           27795664-27795674,27795743-27795892,27796182-27797906,
           27799447-27799546,27799657-27800268,27800399-27800521,
           27800905-27801039,27801108-27801209,27801716-27801778,
           27801854-27802045,27802121-27802258,27802632-27802694,
           27803068-27803466
          Length = 1270

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 220 REYQIFQYGVIYRSQCPGTGPFLLVGYTCLVAGLGQ 327
           R + +F+ G I    CP T PF+   Y  LV  + Q
Sbjct: 798 RRFVLFEIGYIL---CPTTKPFVSSNYLALVKDINQ 830


>05_04_0262 - 19514426-19515625
          Length = 399

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 88  DGARSDF-RVPRTLLVNLDTILQ 23
           DG R  F R+PR LLV+LD  ++
Sbjct: 172 DGIRRGFSRIPRALLVSLDNCMR 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,427
Number of Sequences: 37544
Number of extensions: 211817
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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