Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A21
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 105 1e-23
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 103 4e-23
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 31 0.19
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 0.59
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 0.78
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885... 28 2.4
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 3.1
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 5.5
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 26 7.2
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 26 9.6
05_04_0262 - 19514426-19515625 26 9.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 105 bits (252), Expect = 1e-23
Identities = 48/96 (50%), Positives = 73/96 (76%)
Frame = -3
Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++I
Sbjct: 96 VATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVI 151
Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
K+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 152 KIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 103 bits (247), Expect = 4e-23
Identities = 47/96 (48%), Positives = 70/96 (72%)
Frame = -3
Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +++
Sbjct: 109 VATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIM 164
Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 165 KIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 279 PRSRTLTSVYDAILEDLVFPAEIVG 205
PR+RTL +V+D ILED+V ++G
Sbjct: 99 PRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 228 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 121
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 0.78
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 279 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 163
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_02_0312 +
8855664-8855807,8856402-8856465,8858399-8858547,
8859258-8859674
Length = 257
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 70 SHFAPRQLLVYRLEGVNLVFNS 135
+H A +++L ++GVNLVFNS
Sbjct: 59 AHCASKEILSSSIDGVNLVFNS 80
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.5 bits (58), Expect = 3.1
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +2
Query: 92 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 271
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 272 ERGLFC*LATRVLWLGLG 325
GL+ LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 222 PAEIVGKRIRVKLDG-SQLIKVHLDK 148
PA +VG+R+ VKL G +L K +DK
Sbjct: 10 PAAVVGERVAVKLRGYFELAKEEIDK 35
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 150 KNQQTTIEHKVDTFQSVYKKL 88
KNQ+ +I HKVDT +KL
Sbjct: 188 KNQRASISHKVDTVSKESEKL 208
>08_02_1547 +
27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 220 REYQIFQYGVIYRSQCPGTGPFLLVGYTCLVAGLGQ 327
R + +F+ G I CP T PF+ Y LV + Q
Sbjct: 798 RRFVLFEIGYIL---CPTTKPFVSSNYLALVKDINQ 830
>05_04_0262 - 19514426-19515625
Length = 399
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 88 DGARSDF-RVPRTLLVNLDTILQ 23
DG R F R+PR LLV+LD ++
Sbjct: 172 DGIRRGFSRIPRALLVSLDNCMR 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,427
Number of Sequences: 37544
Number of extensions: 211817
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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