Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A21
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               62   9e-11
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.086
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.61 
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)                  29   0.80 
SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.4  
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   27   5.7  
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   27   5.7  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_46505| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)              26   9.9  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                26   9.9  
SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   9.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 62.5 bits (145), Expect = 9e-11
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -3

Query: 159 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 32.7 bits (71), Expect = 0.086
 Identities = 18/75 (24%), Positives = 38/75 (50%)
 Frame = +2

Query: 62  NSKVTSRPVNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSN 241
           ++++ +  +  ++T   + T  ++V C  +  C  +    S  T++ +P      TRS N
Sbjct: 34  SNEIVAVTLTTIFTCVTIVTCATVVTCVTVITCVTVIAYVSGLTVLLMPV-----TRSRN 88

Query: 242 MASYTEVSVLERGLF 286
           M+  + + +L RGLF
Sbjct: 89  MSRVSVLRLLSRGLF 103


>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +1

Query: 61  ELESHFAPRQLLVYRLEGVNLVFNSCLLVFV*MHFDEL*AIELHSDAFANNLGREYQIFQ 240
           E E  F  +  LVY  +GV+ VF   L + +   F    AI L   A    LG   +++ 
Sbjct: 158 EKEPKFNAKSSLVYDPDGVHQVFLVLLFLTIIGEFFSAPAITLADSATLGVLGENKELYG 217

Query: 241 YGVIYRSQCPGTGPFLL 291
              ++ S   GT  FLL
Sbjct: 218 RQRLWGSLGWGTAMFLL 234


>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
          Length = 416

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = +2

Query: 41  IYK*GSGNSKVTSRPVNFLYTD-WKVSTLCSIVVC-------WFLSRCTLMSCEPSSFTL 196
           +Y+ G+G   +     N +YT  WKV+++CSI  C       W L +  L   E  S++ 
Sbjct: 128 VYRTGAGAGGLA---FNLIYTGKWKVASICSIPFCCLPLLSYWLLDKRPLQ--ESDSYSG 182

Query: 197 MRLPTISAGNTRSSNMAS 250
           ++   +    ++++N++S
Sbjct: 183 VKYTKVDEKESQNNNLSS 200


>SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 LCSIVVCWFLSRCTLMSCE--PSSFTLMRLPTISAGNTRSSN 241
           +CS V+ W L    ++SC+  P   +  R+P+IS  N R  N
Sbjct: 41  ICSAVIAWSLIIVLVVSCKWHPVGIS-KRIPSISCDNKRCFN 81


>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 190 EARWLTTHQSASRQKPTDNY 131
           E+R  TTHQ +S + PTD Y
Sbjct: 152 ESRTSTTHQKSSLRSPTDYY 171


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 149  LSRCTLMSCEPSSFTLMRLPTISA----GNTRSSNMASYTEVSVLERGLF--C*LATRVL 310
            LSR   + C+PSS   +R+  ++A    GN+  SN+ +       E+ L     +  R L
Sbjct: 868  LSRKVTVHCQPSSVYRVRILALTADPTIGNSEPSNLLTICTPGSPEKSLVPKQQIRLRSL 927

Query: 311  WLGLGRI 331
            W G  RI
Sbjct: 928  WTGNERI 934


>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 185

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 276 GAFSVSWLHVSCGWAWAGSYGH 341
           GAF V WL  S G +W  + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 74  TSRPVNFLYTDWKVSTLCSIVVCWFLSRCTLMS 172
           T+R   + ++DW ++  C    CW +S  T+ S
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS 152


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKR 199
           + DR+ + K   + R+ +      + TL  V DA+ E+L  P +++G R
Sbjct: 517 MSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYR 565


>SB_46505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 33  VSKFTSKVRGTRKSLRAPSTSCIQTGR 113
           ++K +  +    K+L+ PST+C++T R
Sbjct: 32  INKLSKALTHVAKTLQIPSTTCLETKR 58


>SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)
          Length = 228

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 225 FPAEIVGKRIRVKLDGSQLIKVH 157
           F  E + K  R+ LDG QLI +H
Sbjct: 120 FNYETLNKAFRLLLDGGQLIAIH 142


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 104 DWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLE 274
           DW+ +      VC  LS CTL+   P +    RL  I +G +  S+      +SV E
Sbjct: 532 DWEAARKTGKQVCHLLSICTLI--RPWACLHQRLQLIRSGASTLSDHLQIFPLSVSE 586


>SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 71 LSSSPNLTCKFRHYFTIKIKLP 6
          +S SP+L    RHYF  ++ LP
Sbjct: 3  MSQSPSLIRAIRHYFPYRVILP 24


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 339 DRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILED 232
           D  I+P P H+T   N +K      L S+ D   +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,407
Number of Sequences: 59808
Number of extensions: 256888
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)