Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A21
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 132 5e-32
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 28 1.6
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 1.6
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 1.6
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 1.6
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 2.2
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 2.2
Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 26 6.6
Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical pr... 26 8.7
U97593-3|AAB52876.1| 250|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 132 bits (320), Expect = 5e-32
Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Frame = -3
Query: 336 RKILPKPSHKTRVA-N*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKV 160
R+ILPKP ++ QKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KV
Sbjct: 97 RRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKV 156
Query: 159 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 52
HLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 157 HLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 279 AFSVSWLHVSCGWAWAGSYGH 341
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 208 WQTHQSEARWLTTHQSASRQKPTDNY 131
W+ H+SE WLT Q ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 208 WQTHQSEARWLTTHQSASRQKPTDNY 131
W+ H+SE WLT Q ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 208 WQTHQSEARWLTTHQSASRQKPTDNY 131
W+ H+SE WLT Q ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 192 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 61
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 192 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 61
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical
protein B0334.4 protein.
Length = 210
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -3
Query: 279 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 100
P S + + +LE + IV K++ VK S L +V ++ T I+ +SV
Sbjct: 27 PNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWISRMTDIQVVPVIEESV 86
Query: 99 YKKLTGREVTF 67
Y K++ + VT+
Sbjct: 87 YDKVSKKLVTY 97
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 216 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF-PEPYL 46
++ I + DG Q+ +VH+D N VD + ++ + GR + +E EPY+
Sbjct: 573 QVTSTCIALVTDGQQMQEVHIDSNFPVIQASIVDPYVALLTQ-NGRLLLYELVMEPYV 629
>Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical
protein F28C6.2 protein.
Length = 535
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 249 DAILEDLVFPAEIVGKRIRVKL--DGSQLIKVH-LDKNQQTTIEHKVDTFQSVYKKLTGR 79
D+I E+ + P I+ + + KL G+ L H + KN TI + T + K+TG+
Sbjct: 327 DSISEEFL-PINIIAQEMLEKLMSSGNNLDVCHRMLKNTTATITRVIKTLEVRQPKITGQ 385
Query: 78 E 76
E
Sbjct: 386 E 386
>U97593-3|AAB52876.1| 250|Caenorhabditis elegans Hypothetical
protein C46G7.2 protein.
Length = 250
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 214 DCWQTHQSEARWLTTHQSASR-QKPTDNY 131
D + S+ARW TH+ ++ KP D Y
Sbjct: 112 DWYNKSYSDARWRDTHREINKPYKPLDTY 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,643
Number of Sequences: 27780
Number of extensions: 184665
Number of successful extensions: 456
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -