Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A21
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.26 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.26 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   7.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -3

Query: 264 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 94
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -3

Query: 264 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 94
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -3

Query: 264 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 94
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 5/21 (23%), Positives = 11/21 (52%)
 Frame = +3

Query: 243 WRHIQKSVSWNGAFSVSWLHV 305
           WRH    + W+    +S +++
Sbjct: 390 WRHTSVLIGWSAFLCISLVYI 410


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 264 VSWNGAFSVSWLHVSC 311
           + WN AF+++   +SC
Sbjct: 509 IRWNSAFAIAPAVISC 524


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 264 VSWNGAFSVSWLHVSC 311
           + WN AF+++   +SC
Sbjct: 599 IRWNSAFAIAPAVISC 614


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +3

Query: 243 WRHIQKSVSWNGAFSVSWLHV 305
           WRH    + W   F V + ++
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYI 421


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 80  RPVNFLYTDWKVSTLC 127
           RP N+L     VS LC
Sbjct: 74  RPCNYLLVSLAVSDLC 89


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 241 IGRSGIPGRDCWQTHQSEAR 182
           +G  G     CW  HQS  R
Sbjct: 317 VGLVGNSAVGCWNEHQSLQR 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,966
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)