Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A21
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 107 2e-24
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 107 2e-24
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 105 8e-24
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 102 6e-23
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 102 6e-23
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 28 1.5
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 2.7
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 27 4.6
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 26 6.1
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne... 26 6.1
At2g20590.2 68415.m02408 reticulon family protein non-consensus ... 26 6.1
At2g20590.1 68415.m02407 reticulon family protein non-consensus ... 26 6.1
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP... 26 8.1
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP... 26 8.1
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 107 bits (258), Expect = 2e-24
Identities = 52/96 (54%), Positives = 73/96 (76%)
Frame = -3
Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
+ R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++
Sbjct: 96 IATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIM 151
Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 152 KVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 107 bits (258), Expect = 2e-24
Identities = 52/96 (54%), Positives = 73/96 (76%)
Frame = -3
Query: 345 VGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLI 166
+ R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++
Sbjct: 96 IATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIM 151
Query: 165 KVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 152 KVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 105 bits (252), Expect = 8e-24
Identities = 50/97 (51%), Positives = 71/97 (73%)
Frame = -3
Query: 348 FVGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQL 169
FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS++
Sbjct: 95 FVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKI 150
Query: 168 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
+KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 151 MKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 102 bits (245), Expect = 6e-23
Identities = 48/97 (49%), Positives = 71/97 (73%)
Frame = -3
Query: 348 FVGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQL 169
FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+++
Sbjct: 95 FVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKI 150
Query: 168 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
+KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 151 MKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 102 bits (245), Expect = 6e-23
Identities = 48/97 (49%), Positives = 71/97 (73%)
Frame = -3
Query: 348 FVGDRKILPKPSHKTRVAN*QKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQL 169
FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+++
Sbjct: 95 FVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKI 150
Query: 168 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 58
+KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 151 MKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 122 LCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLERGLFC 289
+C WF C M+ E + TL LP+ + + +S +S+++V+ LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 219 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 100
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 149 LSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVS 265
LSR S FTL ++P I +G T S +S +E+S
Sbjct: 37 LSRFPSFGFSGSDFTLDQIPAIFSGYTAESEDSSSSEMS 75
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 207 QQSRPGIPDLPIWRHIQKSVSWNGAFSVSWL 299
++ R I DL +WR + KS W G + +L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
nearly identical to SP|P35510
Length = 725
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 204 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 73
+++R + LI +KN T+I HK+ F+ K + +EV
Sbjct: 600 QKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEV 643
>At2g20590.2 68415.m02408 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 323
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 225 IPDLPIWRHIQKSVSWNGAFSVSWLHVSC 311
I DL +WR + KS W G +S+L SC
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLS-SC 195
>At2g20590.1 68415.m02407 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 431
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 225 IPDLPIWRHIQKSVSWNGAFSVSWLHVSC 311
I DL +WR + KS W G +S+L SC
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLS-SC 195
>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 254
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 244 GVIYRSQCPGTGPFLLVG 297
G YRS PG PF+ VG
Sbjct: 212 GTFYRSPAPGEPPFIKVG 229
>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 280
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 244 GVIYRSQCPGTGPFLLVG 297
G YRS PG PF+ VG
Sbjct: 212 GTFYRSPAPGEPPFIKVG 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,348,863
Number of Sequences: 28952
Number of extensions: 169028
Number of successful extensions: 432
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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