Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A20
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 0.80
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 3.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 4.3
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 25 5.6
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 24 7.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 7.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 24 9.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 24 9.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.8
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 24 9.8
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 0.80
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 279 SAFVLNL*NAMVFLWHVRHIFVLKSESCVNCISRQNNIISEKL 151
+A + L VFL +VRH + + CV I R +++I E+L
Sbjct: 315 TAVAVELTFTSVFLQNVRHRHMKYIDRCVTSIFRIDSVIEEEL 357
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -3
Query: 297 AYISFFSAFVL---NL*NAMVFLWHVRHIF 217
AYISFF AF + ++ N V L V+HIF
Sbjct: 189 AYISFFQAFYVRCDSVKNLKVALKRVKHIF 218
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 3.2
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 152 SFSDIILFCLD-IQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKNDIYAKS--MRATYK 322
S+ F LD I D TKI + + ++F +LKN +++KS + Y+
Sbjct: 1150 SYQPSPFFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALVGIYR 1209
Query: 323 NEPESHNTVRNIKI 364
++ E+ + +I +
Sbjct: 1210 DQQENSSRTLSINV 1223
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 227 LTCHKKTIAFYKFKTKALK 283
+T HK+TI + FKT LK
Sbjct: 26 ITVHKQTIGKFSFKTMPLK 44
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 24.6 bits (51), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 203 SDLSTKICLTCHKKTIA 253
SD+ ++ +TCHKK I+
Sbjct: 29 SDIFNRLVMTCHKKCIS 45
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 24.2 bits (50), Expect = 7.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 332 LAHFYMWLS*IWHIYHFLVLLF*ICRMLWFFYGMSDIFLCLNLNLVLTVYLG 177
L +Y++L+ + + V + + FYG+ I L L N+ VY G
Sbjct: 302 LVKYYVYLAFVAFVQGLFVTFAPLSYPVMSFYGVRGILLKLIWNIYTFVYYG 353
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 126 FTSQISFSFLDLRHTLHQSNIFNNHSKAQSQRFEITT 16
+TS + +S DLR TL NH + + +IT+
Sbjct: 849 YTSNVDYSHTDLRRTLTAVQ-SGNHLRGLQETIKITS 884
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 23.8 bits (49), Expect = 9.8
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = -2
Query: 394 FSIITYCYFLYFNISD 347
FS++TYC+ L+ ++
Sbjct: 75 FSVVTYCFVLFLQFAE 90
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 56 LLKMLDWCRVCLKSKKEKDICDV 124
LLK L CR+ +KSK +K+ +V
Sbjct: 32 LLKALPECRLVVKSKGDKNNANV 54
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.8 bits (49), Expect = 9.8
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 140 VADKSFSDIILFCLDIQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKN---DIYAKSMR 310
V ++ S+ + +++ QD+DL + H+K I K++ L N + KS++
Sbjct: 1176 VLQQNSSENLNISANLEAVQDNDLRELVSYLRHEKEIMDNKYELTILDNRGLNQQVKSLQ 1235
Query: 311 ATYKNEPESHNTVRNIKI 364
+T + N ++++ +
Sbjct: 1236 STVDSLQLELNRLQSLPV 1253
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 240 LWHVRHIFVLKSESCVNCISRQNNIISEK 154
LW R+I V K E+CV N++++K
Sbjct: 222 LWDPRYIRVFKRENCVEVF--VENVLTKK 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,978
Number of Sequences: 5004
Number of extensions: 29951
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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