Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A20
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0017 - 10649527-10651183,10651264-10652363                       31   0.34 
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    30   0.78 
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373...    28   2.4  
03_05_0671 + 26608953-26609671,26609775-26610495                       27   5.5  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    27   7.2  
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868...    26   9.6  

>06_02_0017 - 10649527-10651183,10651264-10652363
          Length = 918

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 248 IAFYKFKTKALKNDIYAK----SMRATYKNEPESHNTVRNIKIEK 370
           +A  +F  K +KND + +    S+++  +NE  S NT RNI +EK
Sbjct: 333 VAVTQFLKKRIKNDGHTERSISSVKSLIRNEDGSRNTKRNIAMEK 377


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 185 IQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKNDI-YAKSMRATYKNEPESHNTVRNI 358
           ++ T D   S   C  CHK      K  T AL+N +   K  R T  ++P + + +R I
Sbjct: 152 VEFTADGKDSKARCKYCHKDLCCTSKNGTSALRNHLNVCKRKRVTSTDQPVNPSRLRYI 210


>11_01_0485 +
           3728686-3728863,3729933-3730095,3730508-3730549,
           3730833-3730927,3731273-3731334,3731416-3731507,
           3731587-3731722,3731818-3731904,3732430-3732519,
           3732969-3733071,3733616-3733716,3733837-3733971,
           3734006-3734093,3734484-3734544,3734626-3734689,
           3735219-3735347
          Length = 541

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 74  WCRVCLKSKKEKDICDVKTYKNVADKSFSDI 166
           WC   + S +   ICD +T+K ++ +  S +
Sbjct: 362 WCSQGVNSSQHNPICDQETFKMISQRHISSV 392


>03_05_0671 + 26608953-26609671,26609775-26610495
          Length = 479

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -3

Query: 213 LKSESCVNCISRQNNIISEKLLSATFL*VFTSQISFSFLDLRHTLHQSN 67
           L +  CV C + Q  I S +LL A  L +  S I F+F D RH++  S+
Sbjct: 28  LAASRCV-CKAWQAIIDSRRLLRADLLPLSLSGIYFNFHDERHSVFFSH 75


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 65   MLDWCRVCLKSKKEKDICDV---KTYKNVADKSFSDIILFCLDI 187
            +LDW +  LK KK K + D      Y +V  KS   + L C  +
Sbjct: 1111 LLDWVKRLLKEKKLKMLVDPDLRNNYIHVEVKSLIKVALICTQV 1154


>01_06_0115 +
           26585481-26586401,26586501-26586556,26586747-26586876,
           26587396-26587506,26587606-26587674,26588125-26588198,
           26588446-26588581,26588702-26588795,26588901-26589000,
           26589100-26589224,26589597-26589634,26589662-26589742,
           26589868-26589972,26590102-26590166,26590371-26590572,
           26591073-26591159,26591238-26591294,26591369-26591458,
           26591572-26591658,26592204-26592278,26592363-26592463,
           26592565-26592655
          Length = 964

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +2

Query: 56  LLKMLDWCRVCLKSKKEKDICDVKTYKNVADKSFSDIILFCLDIQLTQDSDLSTKICLTC 235
           +L+  ++C VCLKS + K  C  +   +  DK    +I F ++    +D +L +  C  C
Sbjct: 407 ILRSKEYCGVCLKSWQHK--CGGRWKSSKPDK--VAVICFGMEGTYLRDLELISCHCGPC 462

Query: 236 HKKTIAFYKFKTKA 277
             +   F +++  A
Sbjct: 463 KGQKFLFNEWERHA 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,609,553
Number of Sequences: 37544
Number of extensions: 148387
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)