Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A20
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)                      29   1.4  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   2.4  
SB_39510| Best HMM Match : VWA (HMM E-Value=0)                         28   3.2  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)               27   4.2  
SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 27   4.2  
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_14327| Best HMM Match : NHL (HMM E-Value=0)                         27   7.3  
SB_8262| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-18)                  26   9.6  
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     26   9.6  

>SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)
          Length = 211

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 89  LKSKKEKDICDVKTYKNVADKSFSDIILFCLDIQLTQDSDLS 214
           +KSK+E+ IC   TY++V   SFS++     DI  +   D+S
Sbjct: 5   IKSKREQVICQT-TYEHVDVNSFSEMQAIEYDIIKSHSEDIS 45


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 215 CLNLNLVLTVYLGKIILYQKNFYQPHFYKFLHHKYLF 105
           C    + +T    K++   K+FY P  Y+  H+KY++
Sbjct: 717 CFGRIIPVTKKCVKLLKCGKHFYDPQEYRCAHNKYIY 753



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 176 KIILYQKNFYQPHFYKFLHHKYLF 105
           K++   K+FY P  Y+  H+KY++
Sbjct: 686 KLLKCGKHFYDPQEYRCAHNKYIY 709



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 158 KNFYQPHFYKFLHHKYLF 105
           K FY P  YK  H+KY++
Sbjct: 560 KQFYNPKKYKCAHNKYIY 577



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 158 KNFYQPHFYKFLHHKYLF 105
           K+FY P  YK  H++Y++
Sbjct: 604 KHFYDPQRYKCAHNRYIY 621



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 158 KNFYQPHFYKFLHHKYLF 105
           K+FY P  Y+  H+KY++
Sbjct: 780 KHFYDPQEYRCAHNKYIY 797


>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
          Length = 705

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 131 YKNVADKSFSDIILFCLDIQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKND 289
           Y N   ++ SD ++   D   T+D D +  I +    K      F  KALK+D
Sbjct: 194 YPNKNARNLSDALIKAKDEAFTKDRDSAPDIVVILTDKITENVTFPAKALKDD 246


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 131  YKNVADKSFSDIILFCLDIQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKND 289
            Y N   ++ SD ++   D   T+D D +  I +    K      F  KALK+D
Sbjct: 4883 YPNKNARNLSDALIKAKDEAFTKDRDSAPDIVVILTDKITENVTFPAKALKDD 4935


>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 744

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 367 LYFNISDSIMRLWLIFICGSHR 302
           L FN   S++  WLIF+C   R
Sbjct: 4   LNFNCDPSVLYFWLIFLCSVRR 25


>SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 625

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 176 KIILYQKNFYQPHFYKFLHHKYLF 105
           K++   K FY P  Y+  H+KY+F
Sbjct: 77  KLLRCGKRFYNPMKYRCAHNKYIF 100



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 176 KIILYQKNFYQPHFYKFLHHKYLF 105
           K++   K FY P  Y+  H+KY++
Sbjct: 121 KLLRCGKRFYNPMKYRCAHNKYIY 144


>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 50  EWLLKMLDWCRVCLKSKKEKDICDVKTYKNVAD 148
           EW+    DWCRV  + K  + I  +  Y N  D
Sbjct: 403 EWVWAN-DWCRVSRQHKAVQTIVQMSVYSNAFD 434


>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
          Length = 725

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 275 ALKNDIYAKSMRATYKNEPESHNTVRNIK 361
           A  +DI + S    +K+EPES N + N+K
Sbjct: 383 ASDSDINSNSETNFWKSEPESWNQISNVK 411


>SB_8262| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-18)
          Length = 337

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 35  WL*AFEWLLKMLDWCRVCLKSKKEKDICDVKTYKNVADKSFSDIILFC 178
           WL +  WLL +       + ++  +D C  KT+ N+ + ++S +IL C
Sbjct: 117 WLVSSCWLLGIALTIPEIVDAELREDGC-AKTFNNINNYAYSVLILIC 163


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  EWLLKMLDWCRVCLKSKKEKDI 115
           E LL  L W RVCL   K +D+
Sbjct: 533 ELLLTELAWIRVCLLGAKHRDV 554


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 176  KIILYQKNFYQPHFYKFLHHKYLF 105
            K++   K FY P  Y+  H+KY++
Sbjct: 1292 KLLRCGKRFYNPMKYRCAHNKYIY 1315


>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
 Frame = -2

Query: 394 FSIITYCYF-------LYFNISDSIMRLWLIFIC 314
           F  I +C+F       LY      ++RLW +FIC
Sbjct: 393 FGFILWCFFFLWHGQALYLQPRKKLLRLWKLFIC 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,201
Number of Sequences: 59808
Number of extensions: 193661
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)