Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A20
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    32   0.13 
Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    28   2.1  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    28   2.1  
Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    27   4.9  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    26   8.5  

>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 74  WCRVCLKSKKEKDICDVKTYKNVADKSFSDIILFCLDIQLTQDSDLSTK-ICLTCHKKT 247
           +CR+CLK   E D   V  +      ++ D    C +  L + S+ STK  C+ C ++T
Sbjct: 235 YCRICLKKYSENDTKSVPRFLFACGHTYCD---ECCNTILKKKSEYSTKYFCVFCGQRT 290


>Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical
           protein F57G8.5 protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 101 KEKDICDVKTYKNVADKSFSDIILFCLDIQLTQDSDLSTKICLTC 235
           K+K  C V TYK V D     ++  CL ++    S LS KI L C
Sbjct: 321 KDKLDCVVSTYKYVWDSFALPLLFICLGLKF-DFSTLSWKIVLLC 364


>Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical
           protein F57A8.4 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 309 LIDLAYISFFSAFVLNL*NAMVFLWHVRHIFVL 211
           L+DL YI FF+   L + +   FL+H+ H + +
Sbjct: 77  LMDLLYIPFFTVDALAIYHKNEFLYHIWHDYAM 109


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
            helicase protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 122  VKTYKNVADKSFSDIILFCLDIQLTQDSD 208
            VK +KN+ DK F+   +  LD+Q  +D+D
Sbjct: 986  VKKWKNILDKYFTPTEIRQLDVQTMRDAD 1014


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
            helicase protein 1 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 122  VKTYKNVADKSFSDIILFCLDIQLTQDSD 208
            VK +KN+ DK F+   +  LD+Q  +D+D
Sbjct: 986  VKKWKNILDKYFTPTEIRQLDVQTMRDAD 1014


>Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical
           protein C53B4.6 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 212 LNLNLVLTVYLGKIILYQKNFYQPH 138
           L+  L+L+ YLG   LYQ+ FYQ H
Sbjct: 168 LSFALILSAYLG---LYQETFYQKH 189


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 185 IQLTQDSDLSTKICLTCHKKTIAFYKFKTKALKNDIYAKS 304
           IQL  +  L T I  T   K + +    TK L +D++AK+
Sbjct: 605 IQLFTNFSLGTTILQTIFTKYVQYINRFTKILSHDVFAKN 644


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 122 VKTYKNVADKSFSDIILFCLDIQLTQDSD 208
           VK +KN+ D+ F+   L   D+Q  +D+D
Sbjct: 568 VKQWKNILDEHFTPTTLKQRDVQTMKDAD 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,338,755
Number of Sequences: 27780
Number of extensions: 163413
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)