Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A20
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51900.1 68414.m05850 hypothetical protein                          29   1.1  
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA...    29   1.5  
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ...    27   3.4  
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    27   3.4  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    27   6.0  
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    27   6.0  
At1g20570.1 68414.m02565 tubulin family protein                        27   6.0  
At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    26   7.9  
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ...    26   7.9  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    26   7.9  

>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  KSKKEKDICDVKTYKNVADKSFSDIILFCL-DIQLTQDSDLSTKICLTCHKKT 247
           KS+ + ++ D++  KNV D+S  ++  FCL D+      + S K     HKK+
Sbjct: 193 KSEIDNEVFDLEE-KNVMDESLHEVYKFCLTDVDERSKKETSMKDDYIEHKKS 244


>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related similar to wax
           synthase [Simmondsia chinensis] GI:5020219; contains
           Pfam profile PF03062: MBOAT family
          Length = 341

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 385 ITYCYFLYFNISDSIMRLWLIF-ICG 311
           ++YCY++  NI   ++RL+ +  ICG
Sbjct: 19  VSYCYYISANIKTGVLRLFSVLPICG 44


>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 685

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 125 KTYKNVADKSFSDIILFCLDIQLTQDSDLSTKICLTC 235
           K Y + +D SFS+ +   +D++   +S LS  IC  C
Sbjct: 613 KEYLSFSDFSFSEDVWKWMDVRALLNSSLSRPICNGC 649


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
           receptor kinase 1 (BAK1) / somatic embryogenesis
           receptor-like kinase 3 (SERK3) identical to SP|Q94F62
           BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
           1 precursor (EC 2.7.1.37) (BRI1-associated receptor
           kinase 1) (Somatic embryogenesis receptor-like kinase 3)
           {Arabidopsis thaliana}; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain;
           identical to cDNA somatic embryogenesis receptor-like
           kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 65  MLDWCRVCLKSKKEKDICDVKTYKNVADKSFSDIILFCL 181
           +LDW +  LK KK + + DV    N  D+    +I   L
Sbjct: 505 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL 543


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein similar to HepA-related
           protein HARP [Homo sapiens] GI:6693791; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain, PF01844: HNH
           endonuclease
          Length = 1190

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 50  EWLLKMLDWCRVCLKSKKEKDICDVKTYKNVADKSFSDIIL 172
           EW L ++D       SKK+ D  ++KT  +VA+K    I+L
Sbjct: 315 EWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILL 355


>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 203 SDLSTKICLTCHKKTIAFYKFKTKALKNDIYAKSMRATYKNEPESHNTVRNIKIEKI 373
           ++L T+I +      + FY  K   L    + +   AT KNE E  N +  I I +I
Sbjct: 25  NELETEIIIIIGN--VKFYLHKFPLLSKSGFLQKHIATSKNEEEKKNQIDEIDISEI 79


>At1g20570.1 68414.m02565 tubulin family protein
          Length = 976

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 213 LKSESCVNCISRQNNII-SEKLLSATFL*VFTSQISFSFLDLRHTLHQSNIFN 58
           L+S  CV C+  + N++ +EK+L   F       +S S +DL    +  ++ N
Sbjct: 464 LQSPCCVTCVKEEKNVLAAEKVLQGLFC-HENLVVSASKMDLERNKNAWHVLN 515


>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  DWCRVCLKSKKEKDICDVKTYKNVADKSFSDIIL 172
           DWC  C + KKEK    + + + V  K   D+IL
Sbjct: 321 DWCGQCAREKKEKKSQSLASKRKV-KKRKKDMIL 353


>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 478

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +2

Query: 77  CRVCLKSKKEKDICDV---KTYKNVADK 151
           C  CLK+KKE +   V   KT K+V DK
Sbjct: 227 CSRCLKTKKESNSLSVPLKKTRKHVGDK 254


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +2

Query: 203 SDLSTKICLTCHKKTIAFYKFKTK--------ALKNDIYAKSMRATYKNEPES 337
           SDL+ +I       +IAF +F  +        AL+   YA S R +Y N PE+
Sbjct: 168 SDLAGEIAAALAAASIAFKRFDPRYSKLLLDNALRTFEYADSHRGSYTNNPET 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,652,606
Number of Sequences: 28952
Number of extensions: 142156
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)