Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A19
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 206 9e-55
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 206 9e-55
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 1e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 32 0.036
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 1.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 1.4
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 1.8
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 1.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 3.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.1
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.2
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 7.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 7.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 24 7.2
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 24 9.5
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 24 9.5
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 9.5
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 206 bits (503), Expect = 9e-55
Identities = 91/123 (73%), Positives = 112/123 (91%)
Frame = +3
Query: 21 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 200
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 201 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 380
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 381 ECA 389
ECA
Sbjct: 123 ECA 125
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 206 bits (503), Expect = 9e-55
Identities = 91/123 (73%), Positives = 112/123 (91%)
Frame = +3
Query: 21 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 200
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 201 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 380
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 381 ECA 389
ECA
Sbjct: 123 ECA 125
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 1e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +3
Query: 174 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 326
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 327 VNNKGEMKGSAITGPVAKE 383
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 31.9 bits (69), Expect = 0.036
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = -3
Query: 325 MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPL 146
+ ALSS+Y S L +T +T LSS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 145 IPCTAITYRFFAPVLSAQLITAPTGRPS 62
P +A A +++ LI +P P+
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIPA 863
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 1.0
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 286 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 119
+ LLN F L+ +T + S + + ++ EP ++ C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 314 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 228
++ EI+ HP + FPLP LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 1.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 207 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 317
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 152 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 253
SS ++T CWFW R E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 192 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 323
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 3.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 355 EPFISPLLFTMTPALSSKYMNTPS 284
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 243 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 362
P+ I +KP D V + +D+ + N+K ++ A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 285 DGVFIYFEDNAGVIVNNKGEMKGSAI 362
DG + E N ++VN +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 370 GPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 245
GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 972 GPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = -2
Query: 131 NHIQIFCSCIICTIDHSSHWETQRDAELRSRGTTTSSFRHFPR 3
N I +CI +D W++ R+ RG + FP+
Sbjct: 567 NSFDIHYACIEAGVDLRKVWDSVREWRSNLRGVLQLVYETFPK 609
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 23.8 bits (49), Expect = 9.5
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = -3
Query: 244 GITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRP 65
G+ F SSG+ I P A +L R + P + F + AQ+ P
Sbjct: 117 GVVNFFSSGIGGGGFMLIKHPNETAQSLTFREIAPGNVSKHMFDKNPMLAQVGPLSIAIP 176
Query: 64 SEMRNFAPAEPPRPLLD 14
E+ A LLD
Sbjct: 177 GELAGLYEAWKSHGLLD 193
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 23.8 bits (49), Expect = 9.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 278 SKWFPLPDHHCWHYLF 231
S W LPD WH+++
Sbjct: 216 SAWRKLPDAEAWHHIW 231
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 130 ITYRFFAPVLSAQLITAPTGRPSEMR 53
+ Y F P+LS QL T P +P+ +R
Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,324
Number of Sequences: 5004
Number of extensions: 38315
Number of successful extensions: 109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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