BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A19 (390 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 206 9e-55 SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 206 9e-55 SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 1e-06 SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 32 0.036 SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 1.0 SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 1.4 SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 1.8 SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 1.8 SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 3.1 SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.1 SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.2 SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 7.2 SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 7.2 SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 24 7.2 SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 24 9.5 SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 24 9.5 SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 9.5 >SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosaccharomyces pombe|chr 3|||Manual Length = 139 Score = 206 bits (503), Expect = 9e-55 Identities = 91/123 (73%), Positives = 112/123 (91%) Frame = +3 Query: 21 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 200 RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62 Query: 201 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 380 TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122 Query: 381 ECA 389 ECA Sbjct: 123 ECA 125 >SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosaccharomyces pombe|chr 1|||Manual Length = 139 Score = 206 bits (503), Expect = 9e-55 Identities = 91/123 (73%), Positives = 112/123 (91%) Frame = +3 Query: 21 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 200 RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62 Query: 201 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 380 TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122 Query: 381 ECA 389 ECA Sbjct: 123 ECA 125 >SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|Schizosaccharomyces pombe|chr 2|||Manual Length = 126 Score = 46.8 bits (106), Expect = 1e-06 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%) Frame = +3 Query: 174 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 326 A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+ Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90 Query: 327 VNNKGEMKGSAITGPVAKE 383 VN + E G+ I VA E Sbjct: 91 VNKECEPLGTRILSVVANE 109 >SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 886 Score = 31.9 bits (69), Expect = 0.036 Identities = 24/88 (27%), Positives = 39/88 (44%) Frame = -3 Query: 325 MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPL 146 + ALSS+Y S L +T +T LSS T +++ +P P + R P Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836 Query: 145 IPCTAITYRFFAPVLSAQLITAPTGRPS 62 P +A A +++ LI +P P+ Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIPA 863 >SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1154 Score = 27.1 bits (57), Expect = 1.0 Identities = 13/56 (23%), Positives = 25/56 (44%) Frame = -3 Query: 286 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 119 + LLN F L+ +T + S + + ++ EP ++ C ++TYR Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501 >SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces pombe|chr 1|||Manual Length = 743 Score = 26.6 bits (56), Expect = 1.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 314 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 228 ++ EI+ HP + FPLP LFP Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466 >SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate transferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 453 Score = 26.2 bits (55), Expect = 1.8 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +3 Query: 207 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 317 KKG P RK P+++ PF RD +FI E NA Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375 >SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 571 Score = 26.2 bits (55), Expect = 1.8 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +2 Query: 152 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 253 SS ++T CWFW R E G A+ G Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399 >SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1458 Score = 25.4 bits (53), Expect = 3.1 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +3 Query: 192 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 323 IV KGK L + P++ I R G +Y ED GV Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 867 Score = 25.4 bits (53), Expect = 3.1 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = -3 Query: 355 EPFISPLLFTMTPALSSKYMNTPS 284 +P+ P+L + P L Y++ PS Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298 >SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 214 Score = 24.2 bits (50), Expect = 7.2 Identities = 10/40 (25%), Positives = 20/40 (50%) Frame = +3 Query: 243 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 362 P+ I +KP D V + +D+ + N+K ++ A+ Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210 >SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 610 Score = 24.2 bits (50), Expect = 7.2 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +3 Query: 285 DGVFIYFEDNAGVIVNNKGEMKGSAI 362 DG + E N ++VN +M+G+A+ Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241 >SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1822 Score = 24.2 bits (50), Expect = 7.2 Identities = 11/42 (26%), Positives = 22/42 (52%) Frame = -3 Query: 370 GPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 245 GP++ ++ L P +S Y+N + L+GF+ ++ A Sbjct: 972 GPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013 >SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 735 Score = 24.2 bits (50), Expect = 7.2 Identities = 11/43 (25%), Positives = 18/43 (41%) Frame = -2 Query: 131 NHIQIFCSCIICTIDHSSHWETQRDAELRSRGTTTSSFRHFPR 3 N I +CI +D W++ R+ RG + FP+ Sbjct: 567 NSFDIHYACIEAGVDLRKVWDSVREWRSNLRGVLQLVYETFPK 609 >SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosaccharomyces pombe|chr 1|||Manual Length = 611 Score = 23.8 bits (49), Expect = 9.5 Identities = 20/77 (25%), Positives = 28/77 (36%) Frame = -3 Query: 244 GITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRP 65 G+ F SSG+ I P A +L R + P + F + AQ+ P Sbjct: 117 GVVNFFSSGIGGGGFMLIKHPNETAQSLTFREIAPGNVSKHMFDKNPMLAQVGPLSIAIP 176 Query: 64 SEMRNFAPAEPPRPLLD 14 E+ A LLD Sbjct: 177 GELAGLYEAWKSHGLLD 193 >SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 356 Score = 23.8 bits (49), Expect = 9.5 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -2 Query: 278 SKWFPLPDHHCWHYLF 231 S W LPD WH+++ Sbjct: 216 SAWRKLPDAEAWHHIW 231 >SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 407 Score = 23.8 bits (49), Expect = 9.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -3 Query: 130 ITYRFFAPVLSAQLITAPTGRPSEMR 53 + Y F P+LS QL T P +P+ +R Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,755,324 Number of Sequences: 5004 Number of extensions: 38315 Number of successful extensions: 109 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 128029482 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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