Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A19
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          181   2e-46
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   0.77 
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   0.77 
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   28   3.1  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    28   3.1  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    28   3.1  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 28   3.1  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    28   3.1  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 27   4.1  
SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)                 27   7.2  
SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08)             26   9.5  
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   9.5  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  181 bits (440), Expect = 2e-46
 Identities = 84/106 (79%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 200
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82

Query: 201 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 338
           TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 83  TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 30/114 (26%), Positives = 43/114 (37%)
 Frame = -3

Query: 376 ATGPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVA 197
           A+G  I  P   PL  T +PAL S     P      + CLI    +T++L S    +   
Sbjct: 552 ASGAPIRAPI--PLKETPSPALESSPAAMPDATDTAWTCLI----VTYYLESEALHVAAG 605

Query: 196 TIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAE 35
              S     G    +  +  TA    F  PV+S       + + S  RN  P +
Sbjct: 606 ARRSGRRLRGADAGKRGVYATAANVLFAMPVMSGLASRPNSAQSSAFRNTMPVD 659


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 69   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 161
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 69  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 161
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 20
           R + P L   +  AP+G P++  + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 20
           R + P L   +  AP+G P++  + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121  RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 20
            R + P L   +  AP+G P++  + APA P PRPL
Sbjct: 963  RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121  RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 20
            R + P L   +  AP+G P++  + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 166 NLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPR 26
           +L  R L P +   YR  A V   + ++AP  RP   RN    EP R
Sbjct: 15  HLLNRDLRPASTTPYRSRATVTRTRPLSAPPSRP-PWRNPGSPEPKR 60


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 20
           R + P L   +  AP+G P++  + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 166 NLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPRP 23
           +LF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)
          Length = 353

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 205 TVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPV--LSAQLITAPTG 71
           T  TI +P  AA    +   +PC  +  + F+P+   ++ L+  PTG
Sbjct: 272 TSPTIQTPVLAAAQNLKHGKVPCLCVLMKTFSPIGADASILLKDPTG 318


>SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 235 FFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQ 92
           +F+ S +  +   T +  E   G +   PL+  +A+    F PVL AQ
Sbjct: 90  YFIRSNVTRVIDPTQVEKEVYCGEIKENPLVHFSALLSEAFGPVLHAQ 137


>SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08)
          Length = 598

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 371 GSCDSRAFHLPLVVHD-DPRIILEIYEHPVPPSKW 270
           G+  S  F +  V+H+ +   +L   E  VPPSKW
Sbjct: 502 GAISSETFPINEVIHEYNADCLLTYSESLVPPSKW 536


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 257 DHHCWHYLFPEFWFA-FLNCGHNHVTRTSSW*PVQTTLDTLYGN 129
           D +C+ Y+F   WFA  LN G NH  +     P+    D    N
Sbjct: 29  DPNCFSYVFM-CWFARILNLGSNHHLQLEDLTPIHPDHDEAQAN 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,602
Number of Sequences: 59808
Number of extensions: 314974
Number of successful extensions: 873
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)